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ZIRC
ZFIN ID: ZDB-GENE-050522-285
Gene Name: leucine rich melanocyte differentiation associated
Gene Symbol: lrmda    Nomenclature History

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Previous Names: c10orf11 (1), c13h10orf11, si:ch211-39f22.1, zgc:112463

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 13 Mapping Details/Browsers
Description: Involved in melanocyte differentiation. Human ortholog(s) of this gene implicated in oculocutaneous albinism type VII. Is expressed in cranium; mucus secreting cell; neural crest; neural plate; and trunk. Orthologous to human LRMDA (leucine rich melanocyte differentiation associated).
Genome Resources: Alliance (1),  Gene:553730 (1),  Ensembl(GRCz11):ENSDARG00000057166 (2)
GENE EXPRESSION
All Expression Data: 7 figures from 2 publications
Directly Submitted Expression Data: 6 figures (11 images) from Thisse et al., 2004 [MGC:112463]
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Pharyngula:Prim-25 (36.0h-42.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la027392Tg Transgenic Insertion Unknown Unknown DNA
la027393Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa12051 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-lrmda N/A 1
    MO2-lrmda N/A 1
    MO3-lrmda N/A 1
    DISEASE ASSOCIATED WITH lrmda HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    oculocutaneous albinism type VII Alliance Albinism, oculocutaneous, type VII 615179
    DISEASE ASSOCIATED WITH lrmda VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process melanocyte differentiation (more)
    GO Terms (all 2)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001611 (1)
  • InterPro:IPR032675 (1)
  • PROSITE:PS51450 (1)
  • TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA lrmda-201 (1)    Ensembl 1277
    lrmda-202 (1)    Ensembl 1514
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM lrmda No data available
    MARKER RELATIONSHIPS
    lrmda Contained in: [BAC] CH211-39F22 (1) (order this), CH211-159B19 (1) (order this), CH211-172G24 (1) (order this), CH211-203C10 (1) (order this), DKEY-7G2 (1) (order this), DKEY-70E17 (1) (order this)
    lrmda Encodes: [cDNA] MGC:112463 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001020701 (1) 1517 bp
    Genomic GenBank:BX323799 (1) 188145 bp
    Select Tool
    Polypeptide UniProtKB:Q501Y0 (1) 234 aa
    Sequence Clusters UniGene:19770 (1)
    Sequence Information (all 25)
    ORTHOLOGY for lrmda ( Chr: 13 )
    CITATIONS (18)