ZFIN ID: ZDB-GENE-050522-212
Gene Name: SPT2 chromatin protein domain containing 1
Gene Symbol: spty2d1
Sequence Ontology ID : SO:0000704

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Previous Names: wu:fb01d08, zgc:111826

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(Including Attributions)
Location: Chr: 25 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
Directly Submitted Expression Data: 6 figures (14 images) from Thisse et al., 2004 [MGC:111826]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Pharyngula:Prim-5 (24.0h-30.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa25228 Point Mutation Unknown Splice Site ENU
sa38086 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH spty2d1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH spty2d1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process histone exchange (more)
    Cellular Component nucleolus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 9)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR013256 (1)
  • Pfam:PF08243 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA spty2d1-001 (1) 760
    spty2d1-002 (1) 2876
    ncRNA spty2d1-003 (1) 866
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM spty2d1 No data available
    MARKER RELATIONSHIPS
    spty2d1Contained in: [BAC] DKEY-286F11 (1) (order this), DKEYP-19E1 (1)
    spty2d1Encodes: [EST] fb01d08 (1)
    [cDNA] MGC:111826 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001159971 (1) 2609bp
    Genomic GenBank:BX005383 (1) 142728bp
    Select Tool
    Polypeptide UniProtKB:F1R3H5 (1) 632aa
    Sequence Clusters UniGene:70286 (1)
    Sequence Information (all 24)
    OTHER spty2d1 GENE PAGES
  • Alliance (1)
  • Gene:337191 (1)
  • VEGA:OTTDARG00000013061 (1)
  • ORTHOLOGY for spty2d1 (Chr: 25)
    CITATIONS (17)