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ZIRC
ZFIN ID: ZDB-GENE-050522-212
Gene Name: SPT2 chromatin protein domain containing 1
Gene Symbol: spty2d1
Sequence Ontology ID : SO:0001217

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Previous Names: wu:fb01d08, zgc:111826

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(Including Attributions)
Location: Chr: 25 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have DNA binding activity; RNA polymerase I core binding activity; and histone binding activity. Predicted to be involved in nucleosome organization; regulation of chromatin assembly;  ...
GENE EXPRESSION
Directly Submitted Expression Data: 6 figures (14 images) from Thisse et al., 2004 [MGC:111826]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Pharyngula:Prim-5 (24.0h-30.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa25228 Point Mutation Unknown Splice Site ENU
sa38086 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH spty2d1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH spty2d1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process histone exchange (more)
    Cellular Component nucleolus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 9)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR013256 (1)
  • Pfam:PF08243 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA spty2d1-003 (1) 866
    mRNA spty2d1-202 (1) 2876
    spty2d1-203 (1) 760
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM spty2d1 No data available
    MARKER RELATIONSHIPS
    spty2d1 Contained in: [BAC] DKEY-286F11 (1) (order this), DKEYP-19E1 (1)
    spty2d1 Encodes: [EST] fb01d08 (1)
    [cDNA] MGC:111826 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001159971 (1) 2609 bp
    Genomic GenBank:BX005383 (1) 142728 bp
    Select Tool
    Polypeptide UniProtKB:F1R3H5 (1) 632 aa
    Sequence Clusters UniGene:70286 (1)
    Sequence Information (all 24)
    ORTHOLOGY for spty2d1 ( Chr: 25 )
    CITATIONS (20)