ZFIN ID: ZDB-GENE-050522-20
Gene Name: translation machinery associated 16 homolog
Gene Symbol: tma16
Sequence Ontology ID : SO:0000704

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Previous Name: zgc:110664

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(Including Attributions)
Location: Chr: 1 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to colocalize with the ribosome; orthologous to human TMA16 (translation machinery associated 16 homolog).
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:110664]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
zko381a Small Deletion Unknown Unknown CRISPR
  • China Zebrafish Resource Center (CZRC, ZKO consortium) (order this)
  • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH tma16 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH tma16 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process biological_process (more)
    Cellular Component nucleus (more)
    Molecular Function molecular_function (more)
    GO Terms (all 4)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR021346 (1)
  • InterPro:IPR038356 (1)
  • Pfam:PF11176 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA tma16-002 (1) 858
    mRNA tma16-201 (1) 2101
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM tma16 No data available
    MARKER RELATIONSHIPS
    tma16Contained in: [BAC] CH211-42I9 (1) (order this)
    tma16Encodes: [cDNA] MGC:110664 (1) (order this), MGC:173637 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001177745 (1)
    Genomic GenBank:BX323590 (1) 178876bp
    Select Tool
    Polypeptide UniProtKB:A7MCB7 (1) 194aa
    Sequence Clusters UniGene:80119 (1)
    Sequence Information (all 15)
    OTHER tma16 GENE PAGES
  • Alliance (1)
  • Gene:553647 (1)
  • VEGA:OTTDARG00000027115 (1)
  • ORTHOLOGY for tma16 (Chr: 1)
    CITATIONS (14)