header logo image header logo text
Downloads Login
Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-050522-197
Your Input Welcome
We welcome your input and comments. Please use this form to recommend updates to the information in ZFIN. We appreciate as much detail as possible and references as appropriate. We will review your comments promptly.
Please check the highlighted fields and try again.
Thank you for submitting comments. Your input has been emailed to ZFIN curators who may contact you if additional information is required.
Oops. Something went wrong. Please try again later.
Gene Name: ubiquitin specific peptidase 48
Gene Symbol: usp48
Sequence Ontology ID : SO:0000704

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Names: im:7139343, zgc:112364 (1)

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Location: Chr: 11 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have cysteine-type endopeptidase activity and thiol-dependent ubiquitin-specific protease activity. Involved in cranial skeletal system development. Orthologous to human USP48 (ubiquitin  ...
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7139343]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la017881Tg Transgenic Insertion Unknown Unknown DNA
sa21958 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa27819 Point Mutation Unknown Splice Site ENU
    Targeting reagents:
    PHENOTYPE
    Data: 2 figures from 2 publications
    Observed in:
    DISEASE ASSOCIATED WITH usp48 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH usp48 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process cranial skeletal system development (more)
    Molecular Function thiol-dependent ubiquitin-specific protease activity (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000626 (1)
  • InterPro:IPR001394 (1)
  • InterPro:IPR006615 (1)
  • InterPro:IPR018200 (1)
  • InterPro:IPR028889 (1)
  • InterPro:IPR029071 (1)
  • InterPro:IPR033841 (1)
  • InterPro:IPR035927 (1)
  • InterPro:IPR038765 (1)
    		•
  • PROSITE:PS00973 (1)
  • PROSITE:PS50053 (1)
  • PROSITE:PS50235 (1)
  • PROSITE:PS51283 (1)
    		•
  • Pfam:PF00443 (1)
    		•
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA usp48-202 (1) 4226
    Select Tool
    usp48-203 (1) 1867
    Select Tool
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM usp48 No data available
    MARKER RELATIONSHIPS
    usp48Contained in: [BAC] DKEY-178D22 (1) (order this)
    usp48Encodes: [EST] IMAGE:7139343 (1) (order this)
    [cDNA] MGC:112364 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001024410 (1)
    Select Tool
    Genomic GenBank:CU928222 (1) 109067bp
    Select Tool
    Polypeptide UniProtKB:E7EY58 (1) 1092aa
    Select Tool
    Sequence Clusters UniGene:80679 (1)
    Sequence Information (all 16)
    OTHER usp48 GENE PAGES
  • Alliance (1)
  • Gene:100332674 (1)
  • VEGA:OTTDARG00000042567 (1)
  • Ensembl(GRCz11):ENSDARG00000090301 (2)
    • ORTHOLOGY for usp48 (Chr: 11)
    CITATIONS (21)