ZFIN ID: ZDB-GENE-050522-196
Gene Name: alkB homolog 1, histone H2A dioxygenase
Gene Symbol: alkbh1
Sequence Ontology ID : SO:0000704

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Attributions

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Previous Names: si:ch211-133l14.1, zgc:112365

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(Including Attributions)
Location: Chr: 17 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have dioxygenase activity and ferrous iron binding activity; predicted to be involved in oxidation-reduction process; predicted to localize to the mitochondrion and nuclear euchromatin;  ...
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:112365]
  1 figure (1 image) from Thisse et al., 2004 [IMAGE:7156480]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la027816Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH alkbh1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH alkbh1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process oxidation-reduction process (more)
    Cellular Component mitochondrion (more)
    Molecular Function oxidoreductase activity (more)
    GO Terms (all 10)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR004574 (1)
  • InterPro:IPR005123 (1)
  • InterPro:IPR027450 (1)
  • InterPro:IPR037151 (1)
  • PROSITE:PS51471 (1)
  • Pfam:PF13532 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA alkbh1-201 (1) 1214
    aberrant processed transcript alkbh1-202 (1) 1032
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM alkbh1 No data available
    MARKER RELATIONSHIPS
    alkbh1Contained in: [BAC] CH73-276N11 (1) (order this), CH211-133L14 (1) (order this), DKEY-106A20 (1) (order this)
    alkbh1Encodes: [EST] IMAGE:7156480 (1) (order this)
    [cDNA] MGC:112365 (1) (order this), MGC:191937 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001020691 (1) 1229bp
    Genomic GenBank:CU855697 (1) 130734bp
    Select Tool
    Polypeptide UniProtKB:Q502A8 (1) 363aa
    Sequence Clusters UniGene:87445 (1)
    Sequence Information (all 20)
    OTHER alkbh1 GENE PAGES
  • Alliance (1)
  • Gene:553720 (1)
  • VEGA:OTTDARG00000022837 (1)
  • Ensembl(GRCz11):ENSDARG00000071164 (2)
  • ORTHOLOGY for alkbh1 (Chr: 17)
    CITATIONS (18)