ZFIN ID: ZDB-GENE-050522-157
Gene Name: poly(rC) binding protein 3
Gene Symbol: pcbp3    Nomenclature History

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Previous Name: zgc:109966 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 9 Mapping Details/Browsers
Description: Predicted to have RNA binding activity. Is expressed in optic tectum; retina; retinal inner nuclear layer; and telencephalon. Orthologous to human PCBP3 (poly(rC) binding protein 3).
Genome Resources: Alliance (1),  Gene:553765 (1),  Ensembl(GRCz11):ENSDARG00000054378 (2)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la016592Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH pcbp3 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH pcbp3 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process biological_process (more)
    Molecular Function nucleic acid binding (more)
    GO Terms (all 3)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Domain IPR004087 K Homology domain
    Domain IPR004088 K Homology domain, type 1
    Homologous_superfamily IPR036612 K Homology domain, type 1 superfamily
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    aberrant processed transcript pcbp3-205 (1)    Ensembl 780
    mRNA pcbp3-201 (1)    Ensembl 977
    pcbp3-204 (1)    Ensembl 1035
    pcbp3-206 (1)    Ensembl 1053
    ncRNA pcbp3-002 (1)    Ensembl 280
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM pcbp3 No data available
    MARKER RELATIONSHIPS
    pcbp3 Contained in: [BAC] DKEY-253A1 (1) (order this)
    pcbp3 Encodes: [cDNA] MGC:109966 (1), MGC:192265 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001020731 (1) 993 nt
    Genomic GenBank:BX247868 (1) 258322 nt Blast at MegaBLAST
    Polypeptide UniProtKB:A8WHQ1 (1) 350 aa
    Sequence Information (all 62)
    ORTHOLOGY for pcbp3 ( Chr: 9 )
    CITATIONS (22)