ZFIN ID: ZDB-GENE-050522-120
Gene Name: RNA polymerase II subunit J
Gene Symbol: polr2j    Nomenclature History

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Previous Names: rpb11 (1), zgc:110005

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 5 Mapping Details/Browsers
Description: Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to be involved in transcription by RNA polymerase II. Predicted to localize to RNA polymerase II, core complex. Orthologous to several human genes including POLR2J (RNA polymerase II subunit J).
Genome Resources: Alliance (1),  Gene:554099 (1),  Ensembl(GRCz11):ENSDARG00000035146 (2)
GENE EXPRESSION
All Expression Data: Fig. 2 from Levraud et al., 2007
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS No data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH polr2j HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH polr2j VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process transcription by RNA polymerase II (more)
Cellular Component RNA polymerase II, core complex (more)
Molecular Function DNA binding (more)
GO Terms (all 7)
PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA polr2j-201 (1)    Ensembl 631
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM polr2j No data available
MARKER RELATIONSHIPS
polr2j Contained in: [BAC] DKEY-261J4 (1) (order this), DKEYP-36F5 (1)
polr2j Encodes: [cDNA] MGC:110005 (1), MGC:192576 (1)
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_001024400 (1) 630 nt
Genomic GenBank:AL935280 (1) 221563 nt Blast at MegaBLAST
Polypeptide UniProtKB:Q4VBU5 (1) 117 aa
Sequence Information (all 13)
ORTHOLOGY for polr2j ( Chr: 5 )
CITATIONS (18)