ZFIN ID: ZDB-GENE-050517-31
Gene Name: ATP-binding cassette, sub-family F (GCN20), member 1
Gene Symbol: abcf1
Sequence Ontology ID : SO:0000704

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Previous Names: wu:fb79c06 (1), wu:fc39a05 (1), wu:fj94a08 (1), zgc:85667

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(Including Attributions)
Location: Chr: 19 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have ATP binding activity and ATPase activity; orthologous to human ABCF1 (ATP binding cassette subfamily F member 1).
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:85667]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la028034Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa23549 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa23550 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH abcf1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH abcf1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Molecular Function ATPase activity (more)
    GO Terms (all 3)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR003439 (1)
  • InterPro:IPR003593 (1)
  • InterPro:IPR017871 (1)
  • InterPro:IPR027417 (1)
  • PROSITE:PS00211 (1)
  • PROSITE:PS50893 (1)
  • Pfam:PF00005 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA abcf1-003 (1) 663
    mRNA abcf1-201 (1) 3347
    abcf1-202 (1) 821
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM abcf1 No data available
    MARKER RELATIONSHIPS
    abcf1Contained in: [BAC] CH211-215A10 (1) (order this)
    abcf1Encodes: [EST] fb79c06, fc39a05, fj94a08
    [cDNA] MGC:85667 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_213186 (1) 3465bp
    Genomic GenBank:BX510301 (1) 209585bp Blast at MegaBLAST
    Polypeptide UniProtKB:A3KPX2 (1) 877aa
    Sequence Clusters UniGene:155158 (1)
    Sequence Information (all 25)
    OTHER abcf1 GENE PAGES
  • Alliance (1)
  • Gene:406467 (1)
  • VEGA:OTTDARG00000015317 (1)
  • Ensembl(GRCz11):ENSDARG00000031795 (2)
  • ORTHOLOGY for abcf1 (Chr: 19)
    CITATIONS (32)