ZFIN ID: ZDB-GENE-050513-2
Gene Name: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fb
Gene Symbol: sema3fb
Sequence Ontology ID : SO:0000704

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Previous Names: sema3f2 (1), sb:cb931

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(Including Attributions)
Location: Chr: 11 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 10 figures from 5 publications
Directly Submitted Expression Data: 6 figures (9 images) from Thisse et al., 2001 [cb931]
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Hatching:Pec-fin (60.0h-72.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la012019Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la027274Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa13129 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa14466 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa24893 Point Mutation Unknown Premature Stop ENU
    sa35134 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa38853 Point Mutation Unknown Premature Stop ENU
    Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH sema3fb HUMAN ORTHOLOG No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process negative chemotaxis (more)
    Cellular Component extracellular space (more)
    Molecular Function neuropilin binding (more)
    GO Terms (all 3)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001627 (1)
  • InterPro:IPR003598 (1)
  • InterPro:IPR003599 (1)
  • InterPro:IPR007110 (1)
  • InterPro:IPR013151 (1)
  • InterPro:IPR013783 (1)
  • InterPro:IPR016201 (1)
  • InterPro:IPR027231 (1)
  • InterPro:IPR036179 (1)
  • InterPro:IPR036352 (1)
  • PROSITE:PS50835 (1)
  • PROSITE:PS51004 (1)
  • Pfam:PF00047 (1)
  • Pfam:PF01403 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA sema3fb-001 (1) 5761
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM sema3fb No data available
    MARKER RELATIONSHIPS
    sema3fbContained in: [BAC] CH211-196F4 (1) (order this), DKEYP-92B10 (1)
    sema3fbEncodes: [EST] cb931 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_005172909 (1) 3505bp
    Genomic GenBank:CU302307 (1) 178447bp
    Select Tool
    Polypeptide UniProtKB:A0A2R8Q5T8 (1) 791aa
    Sequence Clusters UniGene:151639 (1)
    Sequence Information (all 32)
    OTHER sema3fb GENE PAGES
  • Alliance (1)
  • Gene:799945 (1)
  • VEGA:OTTDARG00000008675 (1)
  • Ensembl(GRCz11):ENSDARG00000055373 (1)
  • ORTHOLOGY for sema3fb (Chr: 11)
    CITATIONS (22)