ZFIN ID: ZDB-GENE-050513-1
Gene Name: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa
Gene Symbol: sema3fa
Sequence Ontology ID : SO:0000704

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Previous Names: sema3f1 (1), wu:fb92d12

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(Including Attributions)
Location: Chr: 6 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have chemorepellent activity, neuropilin binding activity, and semaphorin receptor binding activity; involved in neural crest cell migration; predicted to localize to the extracellular  ...
GENE EXPRESSION
All Expression Data: 5 figures from 5 publications
Wild-type Stages, Structures: Segmentation:14-19 somites (16.0h-19.0h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Targeting reagents:
PHENOTYPE No data available
DISEASE ASSOCIATED WITH sema3fa HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH sema3fa VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process neural crest cell migration (more)
Cellular Component extracellular space (more)
Molecular Function neuropilin binding (more)
GO Terms (all 4)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001627 (1)
  • InterPro:IPR003598 (1)
  • InterPro:IPR003599 (1)
  • InterPro:IPR007110 (1)
  • InterPro:IPR013151 (1)
  • InterPro:IPR013783 (1)
  • InterPro:IPR015943 (1)
  • InterPro:IPR016201 (1)
  • InterPro:IPR027231 (1)
  • InterPro:IPR036179 (1)
  • InterPro:IPR036352 (1)
  • PROSITE:PS50835 (1)
  • PROSITE:PS51004 (1)
  • Pfam:PF00047 (1)
  • Pfam:PF01403 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA sema3fa-201 (1) 3923
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM sema3fa No data available
    MARKER RELATIONSHIPS
    sema3faContained in: [BAC] DKEY-20F24 (1) (order this)
    sema3faContains: [SNP] rs3727987, rs3727988
    sema3faEncodes: [EST] fb92d12 (1)
    [cDNA] cssl:d409 (1), MGC:195068 (1) (order this), MGC:195079 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001014822 (1) 2391bp
    Genomic GenBank:BX950172 (1) 231139bp Blast at MegaBLAST
    Polypeptide UniProtKB:F1QPG9 (1) 801aa
    Sequence Clusters UniGene:133525 (1)
    Sequence Information (all 31)
    OTHER sema3fa GENE PAGES
  • Alliance (1)
  • Gene:544658 (1)
  • VEGA:OTTDARG00000019908 (1)
  • Ensembl(GRCz11):ENSDARG00000011163 (2)
  • ORTHOLOGY for sema3fa (Chr: 6)
    CITATIONS (24)