Gene

ubfd1

ID

ZDB-GENE-050506-90

Name

ubiquitin family domain containing 1

Symbol

ubfd1 Nomenclature History

Previous Names

im:6905175
zgc:162578 (1)

Type

protein_coding_gene

Location

Chr: 3 Mapping Details/Browsers

Description

Orthologous to human UBFD1 (ubiquitin family domain containing 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

IMAGE:6905175 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With ubfd1 Human Ortholog

No data available

Associated With ubfd1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR019954	Ubiquitin conserved site
Domain	IPR000626	Ubiquitin-like domain
Family	IPR039120	Ubiquitin domain-containing protein UBFD1
Homologous_superfamily	IPR029071	Ubiquitin-like domain superfamily

Domain Details Per Protein

Protein	Length	Ubiquitin conserved site	Ubiquitin domain-containing protein UBFD1	Ubiquitin-like domain	Ubiquitin-like domain superfamily
UniProtKB:A3KNV8 InterPro	279
UniProtKB:A0A8M2BBI1 InterPro	290

Transcripts

Genome Browsers

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	ubfd1-201 (1) Ensembl	Ensembl		673 nt	Select Tool
mRNA	ubfd1-202 (1) Ensembl	Ensembl		1,046 nt	Select Tool ZFIN BLAST
mRNA	ubfd1-203 (1) Ensembl	Ensembl		1,237 nt	Select Tool
mRNA	ubfd1-204 (1) Ensembl	Ensembl		1,446 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations