ZFIN ID: ZDB-GENE-050506-80
Gene Name: leucine rich repeat transmembrane neuronal 1
Gene Symbol: lrrtm1    Nomenclature History

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Previous Name: im:6904481

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 1 Mapping Details/Browsers
Description: Exhibits identical protein binding activity. Predicted to localize to extracellular matrix and extracellular space. Is expressed in several structures, including anterior neural keel; anterior neural rod; basal plate midbrain region; immature eye; and nervous system. Orthologous to human LRRTM1 (leucine rich repeat transmembrane neuronal 1).
Genome Resources: Alliance (1),  Gene:570385 (1),  Ensembl(GRCz11):ENSDARG00000052713 (2)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa12867 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa15349 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa16451 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • zko797a Indel Unknown Unknown CRISPR
  • China Zebrafish Resource Center (CZRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-lrrtm1 1
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH lrrtm1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH lrrtm1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component integral component of membrane (more)
    Molecular Function identical protein binding (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA lrrtm1-201 (1)    Ensembl 2523
    Browsers: NCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    SignaFish
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM lrrtm1 No data available
    MARKER RELATIONSHIPS
    lrrtm1 Contained in: [BAC] CH211-87B14
    lrrtm1 Encodes: [EST] cssl:d0378 (1), IMAGE:6904481 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:XM_005160082 (1)
    Genomic GenBank:CU076051 (1) 123947 nt
    Select Tool
    Polypeptide UniProtKB:B8JKM0 (1) 524 aa
    Sequence Information (all 13)
    ORTHOLOGY for lrrtm1 ( Chr: 1 )
    CITATIONS (27)