ZFIN ID: ZDB-GENE-050425-1
Gene Name: FAT atypical cadherin 1a
Gene Symbol: fat1a    Nomenclature History

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Previous Names: fat1, fat

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 1 Mapping Details/Browsers
Description: Predicted to have calcium ion binding activity. Involved in pronephros development. Predicted to localize to membrane. Is expressed in several structures, including digestive system; nervous system; otic vesicle; pleuroperitoneal region; and tail bud. Orthologous to human FAT1 (FAT atypical cadherin 1).
Genome Resources: Alliance (1),  Gene:406172 (1),  Ensembl(GRCz11):ENSDARG00000017591 (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa494 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa1140 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa1599 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa12774 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa13483 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa14711 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa24837 Point Mutation Unknown Premature Stop ENU
    sa25555 Point Mutation Unknown Premature Stop ENU
    sa32637 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa38253 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa39579 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa39580 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa44505 Point Mutation Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • vu208 Point Mutation Unknown Unknown ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-fat1a
    1
    MO1-fat1a N/A 2
    MO2-fat1a N/A 1
    PHENOTYPE
    Data: 3 figures from 2 publications
    Observed in:
    DISEASE ASSOCIATED WITH fat1a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH fat1a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process pronephros development (more)
    Cellular Component membrane (more)
    Molecular Function calcium ion binding (more)
    GO Terms (all 9)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA fat1a-202 (1)    Ensembl 16375
    ncRNA fat1a-002 (1)    Ensembl 811
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM fat1a No data available
    MARKER RELATIONSHIPS
    fat1a Contained in: [BAC] CH211-194C21 (1), CH211-197N1 (1), DKEY-32G22 (1) (order this), DKEY-228C11 (1) (order this)
    fat1a Encodes: [EST] eu651 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_212967 (1) 14164 nt
    Genomic GenBank:BX323008 (1) 216850 nt Blast at MegaBLAST
    Polypeptide UniProtKB:E9QCG2 (1) 4614 aa
    Sequence Information (all 31)
    ORTHOLOGY for fat1a ( Chr: 1 )
    CITATIONS (29)