header logo image header logo text
Downloads Login
Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-050419-256
Gene Name: chromodomain helicase DNA binding protein 2
Gene Symbol: chd2
Sequence Ontology ID : SO:0001217

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Name: si:ch211-196l7.5

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Location: Chr: 18 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have ATP binding activity. Involved in chordate embryonic development and locomotion. Predicted to localize to the nucleus. Used to study childhood onset epileptic encephalopathy. Human  ...
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7158683]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
DISEASE ASSOCIATED WITH chd2 HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
childhood onset epileptic encephalopathy Epileptic encephalopathy, childhood-onset 615369
DISEASE ASSOCIATED WITH chd2 VIA EXPERIMENTAL MODELS
Human Disease Fish Conditions Citations
childhood onset epileptic encephalopathy WT + MO1-chd2 standard conditions Suls et al., 2013
GENE ONTOLOGY
Ontology GO Term
Biological Process chordate embryonic development (more)
Cellular Component nucleus (more)
Molecular Function ATP binding (more)
GO Terms (all 4)
TRANSCRIPTS
Type Name Length (bp) Analysis
mRNA chd2-201 (1) 5084
chd2-202 (1) 671
GENE PRODUCT DESCRIPTION
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM chd2 No data available
MARKER RELATIONSHIPS
chd2 Contained in: [BAC] CH211-196L7 (1) (order this)
chd2 Encodes: [EST] IMAGE:7158683 (1) (order this)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:NM_001281462 (1) 7596 bp
Genomic GenBank:BX649578 (1) 211922 bp Blast at MegaBLAST
Polypeptide UniProtKB:A0A0R4IR86 (1) 1799 aa
Sequence Information (all 18)
ORTHOLOGY for chd2 ( Chr: 18 )
CITATIONS (25)