ZFIN ID: ZDB-GENE-050419-118
Gene Name: CUB and Sushi multiple domains 3a
Gene Symbol: csmd3a    Nomenclature History

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Previous Names: si:ch211-236p22.1, si:ch73-211l23.1

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 16 Mapping Details/Browsers
Description: Predicted to localize to integral component of membrane. Used to study schizophrenia. Orthologous to human CSMD3 (CUB and Sushi multiple domains 3).
Genome Resources: Alliance (1), 
GENE EXPRESSION No data available
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
a254 Small Deletion Unknown Unknown CRISPR
sa8930 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa9590 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa16830 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa17497 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa17498 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa19154 Point Mutation Unknown Unknown ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa22949 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa22950 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa22951 Point Mutation Unknown Missense ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa31008 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa42821 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa42822 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa42823 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa42824 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa44860 Point Mutation Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • sa44861 Point Mutation Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-csmd3a 1
    CRISPR2-csmd3a 1
    CRISPR3-csmd3a 1
    CRISPR4-csmd3a 1
    PHENOTYPE
    Data: 2 figures from Thyme et al., 2019
    Observed in:
    DISEASE ASSOCIATED WITH csmd3a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH csmd3a VIA EXPERIMENTAL MODELS
    Human Disease Fish Conditions Citations
    schizophrenia csmd3aa254/a254 standard conditions Thyme et al., 2019
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component integral component of membrane (more)
    GO Terms (all 2)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA csmd3 (1 of many)-203 (1)    Ensembl 4900
    si:ch211-236p22.1-001 (1) 5395
    ncRNA si:ch211-236p22.1-003 (1)    Ensembl 539
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM csmd3a No data available
    MARKER RELATIONSHIPS
    csmd3a Contained in: [BAC] CH73-140O19 (1), CH73-211L23 (1), CH73-373E20 (1), CH211-190G11 (1), CH211-236P22 (1)
    [Fosmid] CH1073-79F2 (1), CH1073-357A8 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    Genomic GenBank:CR388140 (1) 160541 nt
    Select Tool
    Polypeptide UniProtKB:A0A2R8QQM9 (1) 3555 aa
    Sequence Information (all 14)
    ORTHOLOGY for csmd3a ( Chr: 16 )
    CITATIONS (11)