ZFIN ID: ZDB-GENE-050417-354
Gene Name: cytokine receptor-like factor 3
Gene Symbol: crlf3    Nomenclature History

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Previous Names: clf-3 (1), fd20c08, im:7137736, wu:fd20c08, zgc:110212

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 3 Mapping Details/Browsers
Description: Predicted to have DNA binding activity. Predicted to localize to nucleus. Is expressed in adaxial cell; blood; ventral mesoderm; and yolk syncytial layer. Orthologous to human CRLF3 (cytokine receptor like factor 3).
Genome Resources: Alliance (1),  Gene:550515 (1),  Ensembl(GRCz11):ENSDARG00000070261 (2)
GENE EXPRESSION
All Expression Data: 6 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7137736]
  4 figures (4 images) from Thisse et al., 2004 [IMAGE:7146573]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
 
High Throughput Expression: Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la015191Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa10525 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa40110 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH crlf3 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH crlf3 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component cytoplasm (more)
    Molecular Function DNA binding (more)
    GO Terms (all 3)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA crlf3-201 (1)    Ensembl 2561
    crlf3-204 (1)    Ensembl 512
    ncRNA crlf3-002 (1)    Ensembl 539
    crlf3-004 (1)    Ensembl 747
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM crlf3 No data available
    MARKER RELATIONSHIPS
    crlf3 Contained in: [BAC] DKEY-168A10 (1) (order this)
    crlf3 Encodes: [EST] fd20c08, IMAGE:7137736 (1), IMAGE:7146573 (1)
    [cDNA] MGC:110212 (1), MGC:175007 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001017817 (1) 2559 nt
    Genomic GenBank:BX897744 (1) 144823 nt
    Select Tool
    Polypeptide UniProtKB:A9JRV6 (1) 444 aa
    Sequence Information (all 24)
    ORTHOLOGY for crlf3 ( Chr: 3 )
    CITATIONS (25)