ZFIN ID: ZDB-GENE-050417-341
Gene Name: calpain 2, (m/II) large subunit, like
Gene Symbol: capn2l    Nomenclature History

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Previous Names: wu:fb09d04, xx:hac23b03, zgc:112420, zgc:92480

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 22 Mapping Details/Browsers
Description: Predicted to have calcium ion binding activity and calcium-dependent cysteine-type endopeptidase activity. Predicted to be involved in proteolysis and regulation of cytoskeleton organization. Is expressed in ectoderm; epidermis; lateral line ganglion; pectoral fin; and pharynx. Orthologous to human CAPN2 (calpain 2).
Genome Resources: Alliance (1),  Gene:445091 (1),  Ensembl(GRCz11):ENSDARG00000034211 (1)
GENE EXPRESSION
All Expression Data: 7 figures from 2 publications
Directly Submitted Expression Data: 6 figures (13 images) from Thisse et al., 2004 [MGC:92480]
Wild-type Stages, Structures: Segmentation:14-19 somites (16.0h-19.0h) to Hatching:Long-pec (48.0h-60.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa12826 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH capn2l HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH capn2l VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process proteolysis (more)
    Cellular Component cytoplasm (more)
    Molecular Function calcium-dependent cysteine-type endopeptidase activity (more)
    GO Terms (all 8)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA capn2l-202 (1)    Ensembl 2613
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM capn2l No data available
    MARKER RELATIONSHIPS
    capn2l Contained in: [BAC] CH73-80N6 (1)
    capn2l Encodes: [EST] fb09d04, fb26a06 (1), hac23b03
    [cDNA] MGC:92480 (1), MGC:112420 (1), MGC:174371 (1), MGC:174666 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001003485 (1) 2625 nt
    Genomic GenBank:CT954258 (1) 94799 nt
    Select Tool
    Polypeptide UniProtKB:F6NUF6 (1) 711 aa
    Sequence Information (all 28)
    ORTHOLOGY for capn2l ( Chr: 22 )
    CITATIONS (26)