ZFIN ID: ZDB-GENE-050417-297
Gene Name: zgc:110372
Gene Symbol: zgc:110372    Nomenclature History

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 16 Mapping Details/Browsers
Description: Is expressed in central nervous system; head; optic vesicle; and retinal ganglion cell layer. Orthologous to human IGLON5 (IgLON family member 5).
Genome Resources: Alliance (1),  Gene:550472 (1),  Ensembl(GRCz11):ENSDARG00000022176 (1)

Nomenclature Note: This gene is characterized by full length cDNAs isolated as part of the Zebrafish Gene Collection (ZGC). When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix `zgc:' indicates that this gene is represented by cDNAs generated by the ZGC project.

GENE EXPRESSION
All Expression Data: 8 figures from 2 publications
Directly Submitted Expression Data: 7 figures (10 images) from Thisse et al., 2004 [MGC:110372]
Wild-type Stages, Structures: Segmentation:20-25 somites (19.0h-22.0h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS No data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH zgc:110372 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH zgc:110372 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Molecular Function protein binding (more)
GO Terms (all 1)
PROTEIN FAMILIES, DOMAINS AND SITES
Type InterPro ID Name
Domain IPR003598 Immunoglobulin subtype 2
Domain IPR003599 Immunoglobulin subtype
Domain IPR007110 Immunoglobulin-like domain
Domain IPR013098 Immunoglobulin I-set
Homologous_superfamily IPR013783 Immunoglobulin-like fold
Homologous_superfamily IPR036179 Immunoglobulin-like domain superfamily
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA iglon5-203 (1)    Ensembl 2233
ncRNA zgc:110372-002 (1) 752
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM zgc:110372 No data available
MARKER RELATIONSHIPS
zgc:110372 Contained in: [BAC] CH211-194H19 (1), CH211-234I2 (1)
zgc:110372 Encodes: [cDNA] cssl:d168 (1), MGC:110372 (1), MGC:173668 (1)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:NM_001017775 (1) 2651 bp
Genomic GenBank:CR536619 (1) 179375 bp
Select Tool
Polypeptide UniProtKB:A4JYK9 (1) 332 aa
Sequence Information (all 30)
ORTHOLOGY for zgc:110372 ( Chr: 16 )
CITATIONS (16)