ZFIN is now using GRCz12tu for Genomic Data
Gene
rhbdl3
- ID
- ZDB-GENE-050417-2
- Name
- rhomboid, veinlet-like 3 (Drosophila)
- Symbol
- rhbdl3 Nomenclature History
- Previous Names
-
- si:dkey-10p5.8 (1)
- zgc:113283
- Type
- protein_coding_gene
- Location
- Chr: 6 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable serine-type endopeptidase activity. Predicted to be located in membrane. Is expressed in several structures, including basal plate midbrain region; hatching gland; midbrain neural keel; nervous system; and presumptive diencephalon. Orthologous to human RHBDL3 (rhomboid like 3).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 6 figures from Thisse et al., 2004
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- IMAGE:7159784 (20 images)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Binding_site | IPR018247 | EF-Hand 1, calcium-binding site |
| Domain | IPR002048 | EF-hand domain |
| Domain | IPR022764 | Peptidase S54, rhomboid domain |
| Family | IPR017213 | Peptidase S54, rhomboid, metazoan |
| Family | IPR051739 | Rhomboid-related Intramembrane Serine Proteases |
| Homologous_superfamily | IPR011992 | EF-hand domain pair |
| Homologous_superfamily | IPR035952 | Rhomboid-like superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | EF-Hand 1, calcium-binding site | EF-hand domain | EF-hand domain pair | Peptidase S54, rhomboid domain | Peptidase S54, rhomboid, metazoan | Rhomboid-like superfamily | Rhomboid-related Intramembrane Serine Proteases |
|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:Q2A943 | InterPro | 407 | |||||||
| UniProtKB:A0A8M2BDK9 | InterPro | 388 | |||||||
| UniProtKB:Q566N3 | InterPro | 306 | |||||||
| UniProtKB:A0A8M3BAC5 | InterPro | 399 | |||||||
| UniProtKB:A0A8M9Q644 | InterPro | 297 | |||||||
| UniProtKB:A0A0R4IRL0 | InterPro | 399 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
rhbdl3-201
(1)
|
Ensembl | 1,549 nt | ||
| mRNA |
rhbdl3-202
(1)
|
Ensembl | 1,834 nt | ||
| mRNA |
rhbdl3-203
(1)
|
Ensembl | 2,931 nt | ||
| mRNA |
rhbdl3-204
(1)
|
Ensembl | 1,858 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers