ZFIN ID: ZDB-GENE-050417-171
Gene Name: sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D, like
Gene Symbol: sema6dl    Nomenclature History

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Previous Names: si:ch211-278n20.1, zgc:112012 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 18 Mapping Details/Browsers
Description: Predicted to have chemorepellent activity and semaphorin receptor binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to localize to extracellular space and integral component of plasma membrane. Is expressed in several structures, including brain; cranial ganglion; head; midbrain neural keel; and midbrain neural tube. Orthologous to human SEMA6D (semaphorin 6D).
Genome Resources: Alliance (1),  Gene:550377 (1),  Ensembl(GRCz11):ENSDARG00000011533 (2)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa8429 Point Mutation Unknown Missense, Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa43158 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa45647 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH sema6dl HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH sema6dl VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process axon guidance (more)
    Cellular Component integral component of membrane (more)
    Molecular Function semaphorin receptor binding (more)
    GO Terms (all 12)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA sema6dl-203 (1)    Ensembl 3000
    sema6dl-204 (1)    Ensembl 3057
    sema6dl-205 (1)    Ensembl 540
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM sema6dl No data available
    MARKER RELATIONSHIPS
    sema6dl Contained in: [BAC] CH211-278N20 (1)
    sema6dl Encodes: [cDNA] cssl:d408 (1), cssl:d410 (1), MGC:112012 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001017682 (1) 3157 nt
    Genomic GenBank:BX323575 (1) 151144 nt
    Select Tool
    Polypeptide UniProtKB:A3KPS3 (1) 1018 aa
    Sequence Information (all 39)
    ORTHOLOGY for sema6dl ( Chr: 18 )
    CITATIONS (23)