Gene

si:ch211-198n5.11

ID

ZDB-GENE-050411-52

Name

si:ch211-198n5.11

Symbol

si:ch211-198n5.11 Nomenclature History

Previous Names

im:7143041 (1)

Type

protein_coding_gene

Location

Chr: 8 Mapping Details/Browsers

Description

Predicted to contribute to methylcrotonoyl-CoA carboxylase activity. Predicted to be involved in leucine catabolic process. Predicted to localize to methylcrotonoyl-CoA carboxylase complex and mitochondrion. Is expressed in myotome.

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

4 figures from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:7143041 (7 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With si:ch211-198n5.11 Human Ortholog

No data available

Associated With si:ch211-198n5.11 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR011762	Acetyl-coenzyme A carboxyltransferase, N-terminal
Domain	IPR011763	Acetyl-coenzyme A carboxyltransferase, C-terminal
Domain	IPR034733	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
Family	IPR045190	Methylcrotonoyl-CoA carboxylase beta chain MCCB/AccD1-like
Homologous_superfamily	IPR029045	ClpP/crotonase-like domain superfamily

Domain Details Per Protein

Protein	Length	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Acetyl-coenzyme A carboxyltransferase, C-terminal	Acetyl-coenzyme A carboxyltransferase, N-terminal	ClpP/crotonase-like domain superfamily	Methylcrotonoyl-CoA carboxylase beta chain MCCB/AccD1-like
UniProtKB:A9C3S0 InterPro	603

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	si:ch211-198n5.11-203 (1) Ensembl	Havana	748 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	si:ch211-198n5.11-201 (1) Ensembl	Havana	2107 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	si:ch211-198n5.11-002 (1) Ensembl	Havana	1269 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	si:ch211-198n5.11-004 (1) Ensembl	Havana	772 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	si:ch211-198n5.11-005 (1) Ensembl	Havana	440 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations