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ZIRC
ZFIN ID: ZDB-GENE-050411-10
Gene Name: ubiquitin B
Gene Symbol: ubb    Nomenclature History

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Previous Names: im:6892314 (1), si:ch211-202a12.3 (1), zgc:172187

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 5 Mapping Details/Browsers
Description: Predicted to have protein tag and ubiquitin protein ligase binding activity. Predicted to be involved in modification-dependent protein catabolic process and protein ubiquitination. Predicted to localize to the cytoplasm and nucleus. Orthologous to human UBB (ubiquitin B) and UBC (ubiquitin C).
Genome Resources: Alliance (1),  Gene:550134 (1),  Ensembl(GRCz11):ENSDARG00000093313 (1)
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:6892314]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Day 4 (96.0h-120.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS No data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH ubb HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH ubb VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process modification-dependent protein catabolic process (more)
Cellular Component cytoplasm (more)
Molecular Function protein tag (more)
GO Terms (all 6)
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA ubb-001 (1) 485
INTERACTIONS AND PATHWAYS
SignaFish
ANTIBODIES No data available
CONSTRUCTS WITH SEQUENCES FROM ubb
Construct Regulatory Regions Coding Sequences Species Tg Lines Publications
Tg(-3.5ubb:Cerulean-gmnn-2A-mCherry-cdt1) ubb 2Acdt1CeruleangmnnmCherry Danio rerio 2 7
Tg(-3.5ubb:Cre-ERT2,myl7:EGFP) myl7ubb CreEGFPERT2 Danio rerio 3 14
Tg(-3.5ubb:EGFP) ubb EGFP Danio rerio 2 9
Tg(-3.5ubb:EGFP-Hsa.TARDBP) ubb EGFP Danio rerioHomo sapiens 1 2
Tg(-3.5ubb:LOXP-EGFP-LOXP-mCherry) ubb EGFPmCherry Danio rerio 1 52
Tg(-3.5ubb:LOXP-Hsa.H2B-Cerulean-LOXP-cxcl12b) ubb Ceruleancxcl12bLOXP Danio rerioHomo sapiens 1 1
Tg(-3.5ubb:LOXP-LacZ-LOXP-egfp) ubb LacZLOXP Danio rerio 1 4
Tg(-3.5ubb:mCherry) ubb mCherry Danio rerio 2 7
Tg(-3.5ubb:mCherry-2A-Luciferase) ubb LuciferasemCherry Danio rerio 1 3
Tg(-3.5ubb:SECHsa.ANXA5-mVenus,cryaa:mCherry) cryaaubb mCherrySECVenus Danio rerioHomo sapiens 1 5
Tg(-3.5ubb:TETAM2-2A-AmCyan) ubb 2AAmCyan Danio rerio 1 5
Tg(actb2:LOX2272-LOXP-Tomato-LOX2272-Cerulean-LOXP-EYFP,ubb:TET3G,TETRE:Cre-ERT2) actb2TETREubb CeruleanCreERT2EYFPLOX2272LOXPTET3GTomato Danio rerio 1 1
Tg(ATTB-ubb:EGFP) ubb EGFP Danio rerio 1 2
tg(ubb:2xfyve-egfp) ubb EGFPFYVE Danio rerio 1 1
Tg(ubb:APS) ubb APS Danio rerio 1 2
Tg(ubb:arl13b-EGFP) ubb arl13bEGFP Danio rerio 1 3
Tg(ubb:AVI-Cerulean-Gga.Rangap1) ubb AVICerulean Danio rerioGallus gallus 1 2
Tg(ubb:AVI-Cerulean-rpl10) ubb AVICeruleanrpl10 Danio rerio 1 2
Tg(ubb:bncr,myl7:EGFP) myl7ubb bncrEGFP Danio rerio 1 1
Tg(ubb:Cre,cryaa:Venus) cryaaubb CreVenus Danio rerio 1 2
tg(ubb:cyp24a1-2a-tagbfp) ubb 2Acyp24a1TagBFP Danio rerio 2 1
Tg(ubb:Dre,cryaa:Venus) cryaaubb DreVenus Danio rerio 1 2
Tg(ubb:Dre-PBD,cryaa:ECFP) cryaaubb DreECFPPBD Danio rerio 1 2
Tg(ubb:DsRed) ubb DsRed Danio rerio 1 1
Tg(ubb:DsRed-barcodev6,myl7:EGFP) myl7ubb DsRedEGFP Danio rerio 1 1
Tg(ubb:DsRed-barcodev7,myl7:EGFP) myl7ubb DsRedEGFP Danio rerio 1 2
Tg(ubb:Eco.BirA-EGFP) ubb EGFP Danio rerioEscherichia coli 1 3
Tg(ubb:Eco.BirA-mCherry) ubb mCherry Danio rerioEscherichia coli 1 2
tg(ubb:eos,uas:hsa.kras_g12v-2a-cfp) UASubb 2ACFPEos Danio rerioHomo sapiens 1 1
Tg(ubb:ERT2-GAL4-VP16,cryaa:RFP) cryaaubb GAL4RFPVP16 Danio rerio 2 4
Tg(ubb:GAL4) ubb GAL4 Danio rerio 1 2
tg(ubb:gal4-ert2) ubb ERT2GAL4 Danio rerio 1 1
Tg(ubb:GCaMP6s,myl7:mCherry) myl7ubb GCaMPmCherry Danio rerio 1 2
Tg(ubb:GFP-smad2) ubb GFPsmad2 Danio rerio 1 1
tg(ubb:h2ax-egfp-2a-mcherry-caax) ubb 2ACAAXEGFPh2axmCherry Danio rerio 1 1
tg(ubb:hsa.smn1,myl7:egfp) myl7ubb EGFP Danio rerioHomo sapiens 1 1
Tg(ubb:HyPer) ubb HyPer Danio rerio 1 2
Tg(ubb:iCre-EGFP) ubb CreEGFP Danio rerio 1 1
Tg(ubb:LOX2272-Cerulean,UAS:LOXP-LOX2272-GAL4-LOXP-LIFEACT-GFP) UASubb CeruleanGAL4GFPLIFEACTLOX2272LOXP Danio rerio 1 1
Tg(ubb:LOX2272-Cerulean,UAS:LOXP-LOX2272-GAL4-LOXP-NTR-mCherry) UASubb CeruleanGAL4LOX2272LOXPmCherryNTR Danio rerio 1 1
Tg(ubb:LOX2272-LOXP-Tomato-LOX2272-Cerulean-LOXP-YFP) ubb CeruleanTomatoYFP Danio rerio 3 27
Tg(ubb:loxa-STOP-loxa-ROX-NLS-mCherry-STOP-ROX-EGFP,cryaa:mCherry) cryaaubb EGFPloxamCherryNLSROX Danio rerio 1 2
Tg(ubb:LOXP-AmCyan-LOXP-ZsYellow) ubb AmCyanZsYellow Danio rerio 1 5
Tg(ubb:LOXP-BFP-LOXP-jak1_L910P-FLAG,cryaa:Cerulean) cryaaubb BFPCeruleanFLAGjak1LOXP Danio rerio 3 1
Tg(ubb:LOXP-BFP-LOXP-jak1_S703I-FLAG,cryaa:Cerulean) cryaaubb BFPCeruleanFLAGjak1LOXP Danio rerio 3 1
Tg(ubb:LOXP-BFP-LOXP-kras_G12V) ubb BFPkrasLOXP Danio rerio 1 1
Tg(ubb:LOXP-CFP-LOXP-zgc:114046-mCherry) ubb CFPLOXPmCherryzgc:114046 Danio rerio 1 3
Tg(ubb:LOXP-DsRed-LOXP-dnXla.Smarca4) ubb DsRedLOXP Danio rerioXenopus laevis 1 1
Tg(ubb:LOXP-DsRed-LOXP-GFP-t2A-Hsa.TAU_P301L) ubb 2ADsRedGFPLOXP Danio rerioHomo sapiens 1 1
Tg(ubb:LOXP-DsRed-LOXP-smarca4a) ubb DsRedLOXPsmarca4a Danio rerio 1 1
Tg(ubb:LOXP-ECFP-LOXP-dnraraa-EGFP) ubb ECFPEGFPraraa Danio rerio 1 3
Tg(ubb:LOXP-ECFP-LOXP-dnsox9b-2A-mCherry) ubb 2AECFPLOXPmCherrysox9b Danio rerio 1 1
Tg(ubb:LOXP-ECFP-LOXP-sox9b-2A-mCherry) ubb 2AECFPLOXPmCherrysox9b Danio rerio 1 2
Tg(ubb:LOXP-EGFP-havcr2-LOXP-RFP) ubb EGFPhavcr2LOXPRFP Danio rerio 1 1
Tg(ubb:LOXP-EGFP-LOXP-cdh1-2A-Tomato) ubb 2Acdh1EGFPLOXPTomato Danio rerio 1 1
tg(ubb:loxp-eos-stop-loxp-hsa.kras_g12v-2a-tfp) ubb 2AEosLOXPTFP Danio rerioHomo sapiens 1 1
tg(ubb:loxp-mcherry-loxp-gfp) ubb GFPLOXPmCherry Danio rerio 1 1
Tg(ubb:LOXP-MKATE2-LOXP-dnMmu.Maml1-EGFP) ubb EGFPLOXPMKATE2 Danio rerioMus musculus 1 2
tg(ubb:loxp-nls-ecfp-loxp-gal4-vp16) ubb GAL4LOXPNLSVP16 Danio rerio 1 1
Tg(ubb:LOXP-TagBFP-LOXP-Tomato) ubb LOXPTagBFPTomato Danio rerio 1 2
tg(ubb:loxp-traf3ip1-loxp-myr-mcherry,myl7:egfp) myl7ubb EGFPLOXPmCherryMYRtraf3ip1 Danio rerio 1 1
Tg(ubb:Luciferase,myl7:EGFP) myl7ubb EGFPLuciferase Danio rerio 1 1
Tg(ubb:MA-Cerulean-2A-Hsa.HIST1H2BJ-Tomato) ubb 2ACeruleanMATomato Danio rerioHomo sapiens 1 1
tg(ubb:mmu.elk1-ktr-mclover) ubb KTRmClover Danio rerioMus musculus 1 1
Tg(ubb:Mmu.Slc40a1-EGFP) ubb EGFP Danio rerioMus musculus 1 1
Tg(ubb:NLS-Eco.BirA-mCherry) ubb mCherryNLS Danio rerioEscherichia coli 1 3
Tg(ubb:NLS-zCas9-NLS,myl7:EGFP) myl7ubb EGFPNLSzCas9 Danio rerio 1 1
Tg(ubb:Ola.Bncr,myl7:EGFP) myl7ubb EGFP Danio rerioOryzias latipes 1 1
Tg(ubb:ROX-NLS-mCherry-ROX-EGFP) ubb EGFPmCherryNLSROX Danio rerio 1 2
Tg(ubb:RTTA-2A-RFP-5HS4,TETRE:GFP) TETREubb 2A5HS4GFPRFPRTTA Danio rerio 1 1
Tg(ubb:SEC-EGFP) ubb EGFPSEC Danio rerio 0 1
Tg(ubb:SEC-Rno.Ncan-EGFP) ubb EGFPSEC Danio rerioRattus norvegicus 1 1
Tg(ubb:SECFP) ubb ECFP Danio rerio 1 1
Tg(ubb:SECFP-DEVD-YFP) ubb DEVDECFPYFP Danio rerio 1 1
Tg(ubb:sfGFP-bncr,myl7:EGFP) myl7ubb bncrEGFPGFP Danio rerio 1 1
Tg(ubb:sfGFP-bncr_C97del,myl7:EGFP) myl7ubb bncrEGFPGFP Danio rerio 1 1
Tg(ubb:sfGFP-bncr_N32A_N84A,myl7:EGFP) myl7ubb bncrEGFPGFP Danio rerio 1 1
tg(ubb:si:ch211-193c2.2-egfp) ubb EGFPsi:ch211-193c2.2 Danio rerio 1 1
tg(ubb:si:ch211-193c2.2_r6c-egfp) ubb EGFPsi:ch211-193c2.2 Danio rerio 1 1
tg(ubb:tomato) ubb Tomato Danio rerio 0 1
tg(ubb:zgc:100846_89xccccgg,hsp70l:dsred) hsp70lubb DsRedzgc:100846 Danio rerio 2 1
Tg(Xla.Cryg:CFP,Hsa.EEF1A-4xHsa.U6:Gst.tRNACUA,ubb:AzFRs-FLAG-mCherry-2A-EGFP_Y145amb-NLS) ubb 2ACFPEGFPFLAGmCherryNLS Danio rerioHomo sapiensXenopus laevisbasonym Bacillus stearothermophilus 1 1
tg1(ubb:mir155smn1-dsred) ubb DsRed Danio rerio 1 1
tg2(ubb:mir155smn1-dsred) ubb DsRed Danio rerio 1 1
tg3(ubb:mir155smn1-dsred) ubb DsRed Danio rerio 1 1
tg4(ubb:mir155smn1-dsred) ubb DsRed Danio rerio 1 1
tg5(ubb:mir155smn1-dsred) ubb DsRed Danio rerio 1 1
MARKER RELATIONSHIPS
ubb Contained in: [BAC] CH211-202A12 (1) (order this)
ubb Encodes: [EST] IMAGE:6892314 (1) (order this)
[cDNA] MGC:172187 (1)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:NM_001013272 (1) 2072 bp
Genomic GenBank:AL953908 (1) 193129 bp
Select Tool
Polypeptide UniProtKB:Q6IS68 (1) 624 aa
Sequence Clusters UniGene:104259 (1)
Sequence Information (all 20)
ORTHOLOGY for ubb ( Chr: 5 )
CITATIONS (118)