ZFIN ID: ZDB-GENE-050327-97
Gene Name: RNA binding motif protein 39b
Gene Symbol: rbm39b    Nomenclature History

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Previous Names: rbm39l (1), rnpc2l (1), wu:fa97g07, wu:fb09c08, zgc:112139, zgc:113117

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 8 Mapping Details/Browsers
Description: Predicted to have RNA binding activity. Predicted to be involved in mRNA processing. Predicted to localize to nucleus. Orthologous to human RBM39 (RNA binding motif protein 39).
Genome Resources: Alliance (1),  Gene:541556 (1),  Ensembl(GRCz11):ENSDARG00000041853 (2)
GENE EXPRESSION
High Throughput Expression: GEO (1) Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa14375 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa15085 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa16431 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • sa17954 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa25402 Point Mutation Unknown Premature Stop ENU
    sa38704 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa41262 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-rbm39b
    2
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH rbm39b HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH rbm39b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process mRNA processing (more)
    Cellular Component nucleus (more)
    Molecular Function nucleic acid binding (more)
    GO Terms (all 4)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA rbm39b-201 (1)    Ensembl 2628
    rbm39b-202 (1)    Ensembl 941
    rbm39b-205 (1)    Ensembl 962
    ncRNA rbm39b-004 (1)    Ensembl 928
    rbm39b-005 (1)    Ensembl 839
    rbm39b-006 (1)    Ensembl 772
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM rbm39b No data available
    MARKER RELATIONSHIPS
    rbm39b Contained in: [BAC] DKEY-14F20 (1) (order this)
    rbm39b Encodes: [EST] fa97g07, fb09c08
    [cDNA] MGC:112139 (1), MGC:113117 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001014370 (1) 2655 nt
    Genomic GenBank:CR550308 (1) 137439 nt
    Select Tool
    Polypeptide UniProtKB:Q58ER0 (1) 539 aa
    Sequence Information (all 29)
    ORTHOLOGY for rbm39b ( Chr: 8 )
    CITATIONS (23)