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ZIRC
ZFIN ID: ZDB-GENE-050327-72
Gene Name: scratch family zinc finger 1b
Gene Symbol: scrt1b    Nomenclature History

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Previous Name: zgc:113646

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 16 Mapping Details/Browsers
Description: Predicted to have DNA binding activity and DNA-binding transcription factor activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to localize to the nucleus. Is expressed in central nervous system and spinal cord neural tube. Orthologous to human SCRT1 (scratch family transcriptional repressor 1).
Genome Resources: Alliance (1), Gene:541533 (1), Ensembl(GRCz11):ENSDARG00000040214 (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa36177 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH scrt1b HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH scrt1b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process regulation of transcription, DNA-templated (more)
    Cellular Component nucleus (more)
    Molecular Function metal ion binding (more)
    GO Terms (all 6)
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA scrt1b-201 (1)    Ensembl 1833
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM scrt1bNo data available
    MARKER RELATIONSHIPS
    scrt1bContained in: [BAC] CH211-197I17 (1) (order this)
    scrt1bEncodes: [EST] IMAGE:7147062 (1) (order this)
    [cDNA] MGC:113646 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001014347 (1) 1869bp
    Genomic GenBank:BX569792 (1) 234579bp Blast at MegaBLAST
    Polypeptide UniProtKB:F1R2G9 (1) 279aa
    Sequence Clusters UniGene:43140 (1)
    Sequence Information (all 11)
    ORTHOLOGY for scrt1b (Chr: 16)
    CITATIONS (18)