ZFIN ID: ZDB-GENE-050327-66
Gene Name: zgc:113278
Gene Symbol: zgc:113278    Nomenclature History

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 23 Mapping Details/Browsers
Description: Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane, translocation. Predicted to localize to the rough endoplasmic reticulum.
Genome Resources: Alliance (1),  Gene:541528 (1),  Ensembl(GRCz11):ENSDARG00000037813 (2)

Nomenclature Note: This gene is characterized by full length cDNAs isolated as part of the Zebrafish Gene Collection (ZGC). When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix `zgc:' indicates that this gene is represented by cDNAs generated by the ZGC project.

GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:113278]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa24247 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH zgc:113278 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH zgc:113278 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process protein transport (more)
    Cellular Component integral component of membrane (more)
    Molecular Function molecular_function (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Domain IPR006634 TRAM/LAG1/CLN8 homology domain
    Domain IPR013599 TRAM1-like protein
    Family IPR016447 Translocation associated membrane protein
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA zgc:113278-201 (1)    Ensembl 1568
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM zgc:113278 No data available
    MARKER RELATIONSHIPS
    zgc:113278 Contained in: [BAC] CH211-10D23 (1)
    zgc:113278 Encodes: [cDNA] MGC:113278 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001014341 (1) 1650 bp
    Genomic GenBank:AL954866 (1) 172741 bp
    Select Tool
    Polypeptide UniProtKB:F1QW88 (1) 374 aa
    Sequence Information (all 9)
    ORTHOLOGY for zgc:113278 ( Chr: 23 )
    CITATIONS (18)