ZFIN ID: ZDB-GENE-050320-141
Gene Name: polypyrimidine tract binding protein 2a
Gene Symbol: ptbp2a    Nomenclature History

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Previous Name: zgc:113074 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 24 Mapping Details/Browsers
Description: Predicted to have RNA binding activity. Predicted to be involved in mRNA processing. Predicted to localize to the nucleus. Orthologous to human PTBP2 (polypyrimidine tract binding protein 2).
Genome Resources: Alliance (1),  Gene:541437 (1),  Ensembl(GRCz11):ENSDARG00000101947 (1)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:113074]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
PHENOTYPE No data available
DISEASE ASSOCIATED WITH ptbp2a HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH ptbp2a VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process mRNA processing (more)
Cellular Component nucleus (more)
Molecular Function nucleic acid binding (more)
GO Terms (all 8)
PROTEIN FAMILIES, DOMAINS AND SITES
Type InterPro ID Name
Domain IPR000504 RNA recognition motif domain
Family IPR006536 HnRNP-L/PTB
Homologous_superfamily IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Domain IPR021790 PTBP1, RNA recognition motif 2-like
Domain IPR034798 Polypyrimidine tract-binding protein1/2/3, RNA recognition motif 2
Domain IPR034800 PTBP2, RNA recognition motif 4
Homologous_superfamily IPR035979 RNA-binding domain superfamily
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA ptbp2a-202 (1)    Ensembl 1882
ncRNA ptbp2a-003 (1)    Ensembl 569
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM ptbp2a No data available
MARKER RELATIONSHIPS
ptbp2a Contained in: [BAC] CH73-250G17 (1)
ptbp2a Encodes: [cDNA] MGC:113074 (1), MGC:192342 (1)
ptbp2a Has Artifact: [EST] fe26f02
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:NM_001013562 (1) 1270 bp
Genomic GenBank:CU896585 (1) 102146 bp
Select Tool
Polypeptide UniProtKB:A0A0R4IZG6 (1) 512 aa
Sequence Information (all 21)
ORTHOLOGY for ptbp2a ( Chr: 24 )
CITATIONS (20)