ZFIN ID: ZDB-GENE-050309-289
Gene Name: SET domain containing 1B, a
Gene Symbol: setd1ba
Previous Names: im:7156157, si:dkey-237o15.4
Location: Chr: 10 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 4 figures from 3 publications
Directly Submitted Expression Data: 2 figures (3 images) from Thisse et al., 2004 [IMAGE:7156157]
Wild-type Stages, Structures: Hatching:Long-pec (48.0h-60.0h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
  brain, cerebellum, retinal neural layer
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa12989 Point Mutation Unknown Unknown ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • European Zebrafish Resource Center (EZRC) (order this)
  • sa13004 Point Mutation Unknown Unknown ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • European Zebrafish Resource Center (EZRC) (order this)
  • sa34982 Point Mutation Unknown Unknown ENU
    Targeting reagents: CRISPR1-setd1ba (1), CRISPR2-setd1ba (1), CRISPR3-setd1ba (1), CRISPR4-setd1ba (1), MO1-setd1ba (1) (all 6) expand
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH setd1ba HUMAN ORTHOLOGNo data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process covalent chromatin modification (more)
    Cellular Component chromosome (more)
    Molecular Function RNA binding (more)
    GO Terms (all 13)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000504 (1)
  • InterPro:IPR001214 (1)
  • InterPro:IPR003616 (1)
  • InterPro:IPR012677 (1)
  • InterPro:IPR024657 (1)
  • PROSITE:PS50102 (1)
  • PROSITE:PS50280 (1)
  • PROSITE:PS50868 (1)
  • Pfam:PF00076 (1)
  • Pfam:PF00856 (1)
  • Pfam:PF11764 (1)
  • EC:2.1.1.43 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA setd1ba-001 (1) 5953
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYSNo data available
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM setd1ba No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    setd1baContained in: [BAC] CH211-265M20 (1) (order this), DKEY-237O15 (1) (order this)
    setd1baEncodes: [EST] IMAGE:7156157 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001045134 (1) 8154bp
    Genomic GenBank:BX005309 (1) 179240bp
    Select Tool
    Polypeptide UniProtKB:A0A0R4I9T6 (1) 1847aa
    Sequence Clusters UniGene:80156 (1)
    Sequence Information (all 30)
    OTHER setd1ba GENE PAGES
  • Gene:567970 (1)
  • VEGA:OTTDARG00000023719 (1)
  • Ensembl(GRCz10):ENSDARG00000060847 (1)
  • ORTHOLOGY for setd1ba (Chr: 10)
    Species Symbol Chromosome Accession # Evidence
    Human SETD1B 12
  • Gene:23067
  • OMIM:611055
  • HGNC:29187
  • Amino acid sequence comparison (1)
    Conserved genome location (synteny) (2)
    Mouse Setd1b 5
  • MGI:2652820
  • Gene:208043
  • Amino acid sequence comparison (1)
    Conserved genome location (synteny) (1)
    Download Curated Orthology
    CITATIONS (20)