ZFIN ID: ZDB-GENE-050308-1
Gene Name: poly A binding protein, cytoplasmic 1 b
Gene Symbol: pabpc1b
Sequence Ontology ID : SO:0000704

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(Including Attributions)
Location: Chr: 19 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 8 figures from 2 publications
Directly Submitted Expression Data: 7 figures (22 images) from Thisse et al., 2004 [MGC:73346]
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la027993Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa818 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa6549 Point Mutation Unknown Splice Site ENU
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH pabpc1b HUMAN ORTHOLOG No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component cytoplasm (more)
    Molecular Function nucleic acid binding (more)
    GO Terms (all 3)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000504 (1)
  • InterPro:IPR002004 (1)
  • InterPro:IPR003954 (1)
  • InterPro:IPR006515 (1)
  • InterPro:IPR012677 (1)
  • InterPro:IPR035979 (1)
  • InterPro:IPR036053 (1)
  • PROSITE:PS50102 (1)
  • PROSITE:PS51309 (1)
  • Pfam:PF00076 (1)
  • Pfam:PF00658 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA pabpc1b-001 (1) 2804
    pabpc1b-002 (1) 742
    ncRNA pabpc1b-003 (1) 529
    aberrant processed transcript pabpc1b-004 (1) 1062
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM pabpc1b No data available
    MARKER RELATIONSHIPS
    pabpc1bContained in: [BAC] CH73-132A21 (1) (order this), CH73-378F14 (1) (order this)
    pabpc1bEncodes: [cDNA] MGC:73346 (1) (order this), MGC:77608 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_200882 (1) 2794bp
    Genomic GenBank:CU468824 (1) 64040bp
    Select Tool
    Polypeptide UniProtKB:Q6P3L1 (1) 634aa
    Sequence Clusters UniGene:99377 (1)
    Sequence Information (all 19)
    OTHER pabpc1b GENE PAGES
  • Alliance (1)
  • Gene:393856 (1)
  • VEGA:OTTDARG00000029320 (1)
  • Ensembl(GRCz11):ENSDARG00000021140 (1)
  • ORTHOLOGY for pabpc1b (Chr: 19)
    CITATIONS (24)