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General Information
ZIRC
ZFIN ID: ZDB-GENE-050306-57
Gene Name: VPS9 domain containing 1
Gene Symbol: vps9d1
Sequence Ontology ID : SO:0000704

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Previous Names: c18h16orf7 (1), id:ibd5127, wu:fa56d01, zgc:113159, zgc:158780

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(Including Attributions)
Location: Chr: 18 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Orthologous to human VPS9D1 (VPS9 domain containing 1).
GENE EXPRESSION
All Expression Data: 5 figures from 3 publications
Directly Submitted Expression Data: 3 figures (3 images) from Kudoh et al., 2001 [ibd5127]
  1 figure (1 image) from Thisse et al., 2004 [IMAGE:7152365]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa36596 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH vps9d1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH vps9d1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process biological_process (more)
    Cellular Component cellular_component (more)
    Molecular Function molecular_function (more)
    GO Terms (all 3)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR003123 (1)
  • InterPro:IPR037191 (1)
  • PROSITE:PS51205 (1)
  • Pfam:PF02204 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA vps9d1-003 (1) 760
    vps9d1-005 (1) 715
    vps9d1-006 (1) 359
    vps9d1-007 (1) 595
    mRNA vps9d1-201 (1) 2995
    vps9d1-203 (1) 989
    vps9d1-206 (1) 2172
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM vps9d1 No data available
    MARKER RELATIONSHIPS
    vps9d1Contained in: [BAC] DKEY-238O13 (1) (order this)
    vps9d1Encodes: [EST] fa56d01, ibd5127 (order this), IMAGE:7152365 (1) (order this)
    [cDNA] MGC:113159 (1) (order this), MGC:158780 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001013351 (1)
    Genomic GenBank:CT025859 (1) 165680bp
    Select Tool
    Polypeptide UniProtKB:A5WVP1 (1) 659aa
    Sequence Clusters UniGene:38076 (1)
    Sequence Information (all 29)
    ORTHOLOGY for vps9d1 (Chr: 18)
    CITATIONS (16)