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General Information
ZIRC
ZFIN ID: ZDB-GENE-050302-9
Gene Name: collagen, type II, alpha 1b
Gene Symbol: col2a1b
Sequence Ontology ID : SO:0001217

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Previous Names: im:6788778, zmp:0000000538

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(Including Attributions)
Location: Chr: 11 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have extracellular matrix structural constituent. Involved in fin morphogenesis. Predicted to localize to the collagen trimer; extracellular matrix; and extracellular space. Human  ...
DISEASE ASSOCIATED WITH col2a1b HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
achondrogenesis type II Achondrogenesis, type II or hypochondrogenesis 200610
Kniest dysplasia Kniest dysplasia 156550
Legg-Calve-Perthes disease Legg-Calve-Perthes disease 150600
multiple epiphyseal dysplasia with myopia and deafness Epiphyseal dysplasia, multiple, with myopia and deafness 132450
spondyloepimetaphyseal dysplasia, Strudwick type SMED Strudwick type 184250
spondyloepiphyseal dysplasia congenita SED congenita 183900
Stickler syndrome Stickler syndrome, type I 108300
Torrance type platyspondylic dysplasia Platyspondylic skeletal dysplasia, Torrance type 151210
Avascular necrosis of the femoral head 608805
Czech dysplasia 609162
Osteoarthritis with mild chondrodysplasia 604864
Spondyloepiphyseal dysplasia, Stanescu type 616583
Spondyloperipheral dysplasia 271700
Stickler sydrome, type I, nonsyndromic ocular 609508
Vitreoretinopathy with phalangeal epiphyseal dysplasia
DISEASE ASSOCIATED WITH col2a1b VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process fin development (more)
Cellular Component collagen trimer (more)
Molecular Function extracellular matrix structural constituent (more)
GO Terms (all 10)
TRANSCRIPTS
Type Name Length (bp) Analysis
mRNA col2a1b-002 (1) 189
col2a1b-201 (1) 4933
GENE PRODUCT DESCRIPTION No description available
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM col2a1b No data available
MARKER RELATIONSHIPS
col2a1b Contained in: [Fosmid] ZFOS-2602E3 (1)
col2a1b Encodes: [EST] IMAGE:6788778
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:NM_001281478 (1) 5770 bp
Genomic GenBank:FP326665 (1) 38245 bp
Select Tool
Polypeptide UniProtKB:L0S5L0 (1) 1493 aa
Sequence Clusters UniGene:59620 (1)
Sequence Information (all 19)
ORTHOLOGY for col2a1b ( Chr: 11 )
CITATIONS (28)