ZFIN ID: ZDB-GENE-050302-58
Gene Name: nidogen 1a
Gene Symbol: nid1a    Nomenclature History

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Previous Names: nid1, im:7055206, im:7142300, mg:bb01h02

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 13 Mapping Details/Browsers
Description: Predicted to have Wnt-activated receptor activity and Wnt-protein binding activity. Predicted to be involved in canonical Wnt signaling pathway. Predicted to localize to plasma membrane and receptor complex. Is expressed in central nervous system; digestive system; myoseptum; somite; and swim bladder. Orthologous to human NID1 (nidogen 1).
Genome Resources: Alliance (1),  Gene:562690 (1),  Ensembl(GRCz11):ENSDARG00000068710 (2)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la018705Tg Transgenic Insertion Unknown Unknown DNA
la018706Tg Transgenic Insertion Unknown Unknown DNA
sa8991 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa15334 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa35599 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa45501 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • zju115 Small Deletion Unknown Frameshift, Premature Stop CRISPR
    zju125 Small Deletion Exon 1 Start Loss CRISPR
    Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR2-nid1a 1
    CRISPR-nid1a 1
    MO1-nid1a N/A 1
    MO2-nid1a N/A 2
    PHENOTYPE
    Data: 3 figures from 2 publications
    Observed in:
    DISEASE ASSOCIATED WITH nid1a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH nid1a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process cell-matrix adhesion (more)
    Cellular Component plasma membrane (more)
    Molecular Function calcium ion binding (more)
    GO Terms (all 4)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA nid1a-202 (1)    Ensembl 2638
    Browsers: NCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM nid1a
    Construct Regulatory Regions Coding Sequences Species Tg Lines Publications
    tg1(cca.actb:mcherry-nid1a-capn3a) capn3amCherrynid1a Cyprinus carpioDanio rerio 1 1
    tg2(cca.actb:mcherry-nid1a-capn3a) capn3amCherrynid1a Cyprinus carpioDanio rerio 1 1
    tg3(cca.actb:mcherry-nid1a-capn3a) capn3amCherrynid1a Cyprinus carpioDanio rerio 1 1
    tg4(cca.actb:mcherry-nid1a-capn3a) capn3amCherrynid1a Cyprinus carpioDanio rerio 1 1
    tg5(cca.actb:mcherry-nid1a-capn3a) capn3amCherrynid1a Cyprinus carpioDanio rerio 1 1
    tg6(cca.actb:mcherry-nid1a-capn3a) capn3amCherrynid1a Cyprinus carpioDanio rerio 1 1
    MARKER RELATIONSHIPS
    nid1a Contained in: [BAC] CH73-344P5 (1), CH211-30I2 (1)
    nid1a Encodes: [EST] bb01h02, IMAGE:7055206, IMAGE:7142300 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:XM_686064 (1) 4921 nt
    Genomic GenBank:AL928828 (1) 169046 nt
    Select Tool
    Polypeptide UniProtKB:F1RAG3 (1) 1175 aa
    Sequence Information (all 21)
    ORTHOLOGY for nid1a ( Chr: 13 )
    CITATIONS (26)