ZFIN ID: ZDB-GENE-050208-165
Gene Name: GH3 domain containing
Gene Symbol: ghdc    Nomenclature History

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Previous Names: ghdcl, im:7144495, zgc:163113

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 12 Mapping Details/Browsers
Description: Predicted to have acid-amino acid ligase activity. Predicted to localize to cytoplasm. Is expressed in proliferative region. Orthologous to human GHDC (GH3 domain containing).
Genome Resources: Alliance (1),  Gene:497449 (1),  Ensembl(GRCz11):ENSDARG00000055569 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7144495]
  6 figures (8 images) from Thisse et al., 2004 [IMAGE:7164982]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa11611 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH ghdc HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH ghdc VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process biological_process (more)
    Cellular Component cytoplasm (more)
    Molecular Function acid-amino acid ligase activity (more)
    GO Terms (all 3)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA ghdc-201 (1)    Ensembl 2531
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM ghdc No data available
    MARKER RELATIONSHIPS
    ghdc Contained in: [BAC] DKEYP-45G11 (1)
    ghdc Encodes: [EST] IMAGE:7144495 (1), IMAGE:7164982 (1)
    [cDNA] MGC:163113 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001089358 (1) 2267 nt
    Genomic GenBank:CR354395 (1) 160211 nt
    Select Tool
    Polypeptide UniProtKB:F1QSN8 (1) 614 aa
    Sequence Information (all 13)
    ORTHOLOGY for ghdc ( Chr: 12 )
    CITATIONS (21)