ZFIN Gene: vit

ZFIN ID: ZDB-GENE-050208-114

ZFIN ID: ZDB-GENE-050208-114

Gene Name:

vitrin

Gene Symbol:

vit Nomenclature History

Previous Names:

ch1073-291c23.1, im:7140198 (1), si:ch1073-291c23.1

Gene Type:

protein_coding_gene

Location:

Description:

Involved in visual perception. Predicted to localize to collagen-containing extracellular matrix and extracellular space.

Genome Resources:

Alliance (1), Gene:497398 (1), Ensembl(GRCz11):ENSDARG00000063631 (1)

GENE EXPRESSION
Directly Submitted Expression Data:	1 figure (1 image) from Thisse et al., 2004 [IMAGE:7140198]
Wild-type Stages, Structures:	Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
	unspecified

MUTATIONS AND SEQUENCE TARGETING REAGENTS

Allele	Type	Localization	Consequence	Mutagen	Suppliers
sa1300	Point Mutation	Unknown	Premature Stop	ENU	Zebrafish International Resource Center (ZIRC) (order this)
sa10205	Point Mutation	Unknown	Splice Site	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa16108	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa16980	Point Mutation	Unknown	Splice Site	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa22187	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)

Sequence Targeting Reagents

Targeting Reagent	Created Alleles	Publications
MO1-vit	N/A	1

PHENOTYPE

Data:	2 figures from Wang et al., 2016
Observed in:	retina transmission of nerve impulse retinal bipolar neuron transmission of nerve impulse visual behavior whole organism

DISEASE ASSOCIATED WITH vit HUMAN ORTHOLOG No data available

DISEASE ASSOCIATED WITH vit VIA EXPERIMENTAL MODELS No data available

GENE ONTOLOGY

Ontology	GO Term
Biological Process	visual perception (more)
Cellular Component	collagen-containing extracellular matrix (more)
Molecular Function	molecular_function (more)

GO Terms (all 5)

PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available

TRANSCRIPTS
Type	Name	Length (nt)	Analysis
mRNA	vit-201 (1)	2697	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Browsers: NCBI, Ensembl, ZFIN

INTERACTIONS AND PATHWAYS

ANTIBODIES No data available

PLASMIDS No data available

CONSTRUCTS WITH SEQUENCES FROM vit No data available

MARKER RELATIONSHIPS

vit Contained in:	[Fosmid] CH1073-291C23 (1)
vit Encodes:	[EST] IMAGE:7140198 (1)

SEQUENCE INFORMATION

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:XM_009307031 (1)		Select Tool ZFIN BLAST NCBI BLAST MegaBLAST Ensembl UCSC BLAT
Genomic	GenBank:FO904836 (1)	35777 nt	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:F1Q7N1 (1)	762 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast

ORTHOLOGY for vit ( Chr: 13 )

CITATIONS (19)