Gene

lmx1ba

ID

ZDB-GENE-050114-3

Name

LIM homeobox transcription factor 1, beta a

Symbol

lmx1ba Nomenclature History

Previous Names

lmx1b.2

Type

protein_coding_gene

Location

Chr: 5 Mapping Details/Browsers

Description

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within camera-type eye development; nervous system development; and pronephric glomerulus morphogenesis. Predicted to be active in nucleus. Is expressed in several structures, including axis; midbrain hindbrain boundary neural rod; midbrain neural rod; nervous system; and periocular mesenchyme. Human ortholog(s) of this gene implicated in nail-patella syndrome. Orthologous to human LMX1B (LIM homeobox transcription factor 1 beta).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

18 figures from 12 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: 3 figures from 3 publications
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With lmx1ba Human Ortholog

Disease Ontology Term	Multi-Species Data	OMIM Term	OMIM Phenotype ID
nail-patella syndrome	Alliance	Nail-patella syndrome	161200
		Focal segmental glomerulosclerosis 10	256020

Associated With lmx1ba Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR017970	Homeobox, conserved site
Domain	IPR001356	Homeodomain
Domain	IPR001781	Zinc finger, LIM-type
Family	IPR050453	LIM/homeobox transcription factors
Homologous_superfamily	IPR009057	Homedomain-like superfamily

Domain Details Per Protein

Protein	Additional Resources	Length	Homedomain-like superfamily	Homeobox, conserved site	Homeodomain	LIM/homeobox transcription factors	Zinc finger, LIM-type
UniProtKB:Q4VJ28	InterPro	373
UniProtKB:Q4L1M5	InterPro	375

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	lmx1ba-201 (1) Ensembl	Ensembl	2,057 nt	Select Tool ZFIN BLAST
mRNA	lmx1ba-202 (1) Ensembl	Ensembl	185 nt	Select Tool ZFIN BLAST
mRNA	lmx1ba-203 (1) Ensembl	Ensembl	1,128 nt	Select Tool ZFIN BLAST
mRNA	lmx1ba-204 (1) Ensembl	Ensembl	1,362 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations