ZFIN ID: ZDB-GENE-041212-67
Gene Name: zgc:101540
Gene Symbol: zgc:101540    Nomenclature History

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 25 Mapping Details/Browsers
Description: Predicted to have fatty acid transmembrane transporter activity; long-chain fatty acid-CoA ligase activity; and very long-chain fatty acid-CoA ligase activity. Predicted to be involved in bile acid biosynthetic process. Predicted to localize to the integral component of membrane. Is expressed in gut; intestinal bulb; liver; and yolk syncytial layer.
Genome Resources: Alliance (1),  Gene:494096 (1),  Ensembl(GRCz11):ENSDARG00000100731 (1)

Nomenclature Note: This gene is characterized by full length cDNAs isolated as part of the Zebrafish Gene Collection (ZGC). When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix `zgc:' indicates that this gene is represented by cDNAs generated by the ZGC project.

GENE EXPRESSION
Directly Submitted Expression Data: 5 figures (7 images) from Thisse et al., 2004 [IMAGE:6911372]
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS No data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH zgc:101540 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH zgc:101540 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process bile acid biosynthetic process (more)
Cellular Component integral component of membrane (more)
Molecular Function catalytic activity (more)
GO Terms (all 7)
PROTEIN FAMILIES, DOMAINS AND SITES
Type InterPro ID Name
Conserved_site IPR020845 AMP-binding, conserved site
Domain IPR000873 AMP-dependent synthetase/ligase
Domain IPR025110 AMP-binding enzyme, C-terminal domain
Family IPR030302 Fatty acid transport protein 5
Homologous_superfamily IPR042099 AMP-dependent synthetase-like superfamily
TRANSCRIPTS No data available
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM zgc:101540 No data available
MARKER RELATIONSHIPS
zgc:101540 Encodes: [EST] IMAGE:6911372 (1)
[cDNA] MGC:192559 (1)
zgc:101540 Has Artifact: [EST] fb61a08
[cDNA] MGC:101540 (1)
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_001008639 (1) 2231 nt
Genomic GenBank:CABZ01054088 (1) 63122 nt
Select Tool
Polypeptide UniProtKB:Q5PRD9 (1) 620 aa
Sequence Information (all 16)
ORTHOLOGY for zgc:101540 ( Chr: 25 )
CITATIONS (12)