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ZIRC
ZFIN ID: ZDB-GENE-041212-12
Gene Name: tetraspanin 5b
Gene Symbol: tspan5b    Nomenclature History

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Previous Name: zgc:101855

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 1 Mapping Details/Browsers
Description: Predicted to be involved in positive regulation of Notch signaling pathway; protein localization to plasma membrane; and protein maturation. Predicted to localize to the integral component of plasma membrane. Orthologous to human TSPAN5 (tetraspanin 5).
Genome Resources: Alliance (1),  Gene:494048 (1),  Ensembl(GRCz11):ENSDARG00000070449 (1)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:101855]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa30799 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • zko253b Indel Unknown Unknown CRISPR
  • China Zebrafish Resource Center (CZRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-tspan5b 1
    MO1-tspan5b N/A 1
    PHENOTYPE
    Data: Fig. 2 from Tam et al., 2012
    Observed in:
    DISEASE ASSOCIATED WITH tspan5b HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH tspan5b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component integral component of membrane (more)
    GO Terms (all 3)
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA tspan5b-201 (1)    Ensembl 2069
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM tspan5b No data available
    MARKER RELATIONSHIPS
    tspan5b Contained in: [BAC] DKEY-21J8 (1) (order this), DKEY-58J15 (1) (order this)
    tspan5b Encodes: [cDNA] MGC:101855 (1) (order this), MGC:192016 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001008591 (1) 2082 bp
    Genomic GenBank:BX569778 (1) 255895 bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q5PR95 (1) 271 aa
    Sequence Clusters UniGene:152401 (1)
    Sequence Information (all 13)
    ORTHOLOGY for tspan5b ( Chr: 1 )
    CITATIONS (18)