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ZIRC
ZFIN ID: ZDB-GENE-041210-245
Gene Name: nucleoporin 107
Gene Symbol: nup107
Sequence Ontology ID : SO:0001217

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Previous Names: si:dkey-27k7.3 (1), zgc:152723

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(Including Attributions)
Location: Chr: 4 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to be a structural constituent of nuclear pore. Involved in mRNA export from nucleus and nuclear pore complex assembly. Predicted to localize to the nuclear pore outer ring. Human  ...
GENE EXPRESSION
All Expression Data: 3 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7150867]
  1 figure (1 image) from Thisse et al., 2004 [IMAGE:7152148]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
cl702 Small Deletion Exon 2 Frameshift, Premature Stop CRISPR
la024507Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa840 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa9555 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa11499 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa12652 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa12659 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa31398 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa33466 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa40296 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • tsu068Gt Transgenic Insertion Unknown Unknown DNA
  • China Zebrafish Resource Center (CZRC) (order this)
  • Targeting reagents:
    DISEASE ASSOCIATED WITH nup107 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    nephrotic syndrome type 11 Nephrotic syndrome, type 11 616730
    ovarian dysgenesis 6 ?Ovarian dysgenesis 6 618078
    Galloway-Mowat syndrome 7 618348
    DISEASE ASSOCIATED WITH nup107 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process mRNA export from nucleus (more)
    Cellular Component membrane (more)
    Molecular Function structural constituent of nuclear pore (more)
    GO Terms (all 12)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR007252 (1)
  • Pfam:PF04121 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA nup107-201 (1) 2953
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM nup107 No data available
    MARKER RELATIONSHIPS
    nup107 Contained in: [BAC] DKEY-27K7 (1) (order this)
    nup107 Encodes: [EST] IMAGE:7150867 (1) (order this), IMAGE:7152148 (1) (order this)
    [cDNA] MGC:152723 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001030167 (1) 2953 bp
    Genomic GenBank:BX897665 (1) 129995 bp
    Select Tool
    Polypeptide UniProtKB:A0JMB3 (1) 919 aa
    Sequence Clusters UniGene:48434 (1)
    Sequence Information (all 16)
    ORTHOLOGY for nup107 ( Chr: 4 )
    CITATIONS (35)