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ZIRC
ZFIN ID: ZDB-GENE-041210-237
Gene Name: PDZ domain containing ring finger 4
Gene Symbol: pdzrn4
Sequence Ontology ID : SO:0001217

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Previous Name: si:dkey-240a12.3

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(Including Attributions)
Location: Chr: 4 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Is expressed in basal plate midbrain region; nervous system; and pharyngeal arch. Orthologous  ...
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la015328Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa2153 Point Mutation Unknown Premature Stop ENU
    sa10439 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa31387 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH pdzrn4 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH pdzrn4 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY No data available
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001478 (1)
  • InterPro:IPR036034 (1)
  • PROSITE:PS50106 (1)
  • Pfam:PF00595 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA pdzrn4-201 (1) 2589
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM pdzrn4 No data available
    MARKER RELATIONSHIPS
    pdzrn4 Contained in: [BAC] CH211-250C23 (1) (order this), DKEY-240A12 (1) (order this)
    pdzrn4 Encodes: [EST] eu2444 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001082923 (1) 2368 bp
    Genomic GenBank:BX897729 (1) 201932 bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q5TYS9 (1) 788 aa
    Sequence Clusters UniGene:140220 (1)
    Sequence Information (all 12)
    ORTHOLOGY for pdzrn4 ( Chr: 4 )
    CITATIONS (18)