ZFIN ID: ZDB-GENE-041210-236
Gene Name: contactin 1b
Gene Symbol: cntn1b    Nomenclature History

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Previous Name: si:dkey-240a12.2

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 4 Mapping Details/Browsers
Description: Predicted to have ATP binding activity. Predicted to localize to neuron projection. Is expressed in heart and nervous system. Human ortholog(s) of this gene implicated in Compton-North congenital myopathy. Orthologous to human CNTN1 (contactin 1).
Genome Resources: Alliance (1),  Gene:541474 (1),  Ensembl(GRCz11):ENSDARG00000045685 (2)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
nub10 Small Deletion Exon 5 Unknown TALEN
nub11 Insertion Exon 9 Unknown TALEN
sa10944 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa30847 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa33426 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa33427 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa38430 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa40254 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-cntn1b
    2
    TALEN1-cntn1b
    1
    TALEN2-cntn1b
    1
    PHENOTYPE
    Data: text only from Takeuchi et al., 2017
    Observed in:
    DISEASE ASSOCIATED WITH cntn1b HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    Compton-North congenital myopathy Alliance ?Myopathy, congenital, Compton-North 612540
    DISEASE ASSOCIATED WITH cntn1b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component neuron projection (more)
    Molecular Function ATP binding (more)
    GO Terms (all 2)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA cntn1b-202 (1)    Ensembl 4786
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM cntn1b
    Construct Regulatory Regions Coding Sequences Species Tg Lines Publications
    Tg(cntn1b:mCherry) cntn1b mCherry Danio rerio 1 6
    MARKER RELATIONSHIPS
    cntn1b Contained in: [BAC] DKEY-240A12 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001014814 (1) 4769 nt
    Genomic GenBank:BX897729 (1) 201932 nt Blast at MegaBLAST
    Polypeptide UniProtKB:Q5TYT0 (1) 1039 aa
    Sequence Information (all 9)
    ORTHOLOGY for cntn1b ( Chr: 4 )
    CITATIONS (25)