ZFIN ID: ZDB-GENE-041210-170
Gene Name: si:ch211-239e6.4
Gene Symbol: si:ch211-239e6.4
Sequence Ontology ID : SO:0000704

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Attributions

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Previous Names: zgc:136265 (1), zgc:152667 (1)

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(Including Attributions)
Location: Chr: 4 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Orthologous to human CDPF1 (cysteine rich DPF motif domain containing 1).

Nomenclature Note: This gene is derived from the zebrafish genome sequencing and annotation project. When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix 'si:' indicates that this gene is represented by annotated genomic sequence from the Sanger Institute.

GENE EXPRESSION
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTSNo data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH si:ch211-239e6.4 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH si:ch211-239e6.4 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process biological_process (more)
Cellular Component cellular_component (more)
Molecular Function molecular_function (more)
GO Terms (all 3)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR018785 (1)
  • Pfam:PF10170 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA cdpf1-201 (1) 882
    cdpf1-202 (1) 775
    cdpf1-204 (1) 842
    aberrant processed transcript cdpf1-205 (1) 724
    ncRNA si:ch211-239e6.4-002 (1) 558
    si:ch211-239e6.4-003 (1) 1352
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM si:ch211-239e6.4 No data available
    MARKER RELATIONSHIPS
    si:ch211-239e6.4Contained in: [BAC] CH211-239E6 (1) (order this)
    si:ch211-239e6.4Encodes: [cDNA] MGC:136265 (1) (order this), MGC:152667 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001025527 (1) 671bp
    Genomic GenBank:BX649425 (1) 133503bp
    Select Tool
    Polypeptide UniProtKB:A0A0R4I9K8 (1) 116aa
    Sequence Clusters UniGene:78185 (1)
    Sequence Information (all 27)
    OTHER si:ch211-239e6.4 GENE PAGES
  • Alliance (1)
  • Gene:563220 (1)
  • VEGA:OTTDARG00000008128 (1)
  • ORTHOLOGY for si:ch211-239e6.4 (Chr: 4)
    CITATIONS (12)