ZFIN Gene: snrpa1

ZFIN ID: ZDB-GENE-041114-82

ZFIN ID: ZDB-GENE-041114-82

Gene Name:

small nuclear ribonucleoprotein polypeptide A'

Gene Symbol:

snrpa1

Sequence Ontology ID :

SO:0000704

Previous Names:

im:7142962, zgc:101832 (1)

Location:

Chr: 7 Mapping Details/Browsers

Nomenclature History

AUTOMATED DESCRIPTION

Predicted to have U2 snRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to localize to the U2 snRNP. Human ortholog(s) of this gene implicated in connective ...

GENE EXPRESSION
Directly Submitted Expression Data:	1 figure (1 image) from Thisse et al., 2004 [IMAGE:7142962]
Wild-type Stages, Structures:	Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
	unspecified
Curated Microarray Expression:	GEO (1)

MUTATIONS AND SEQUENCE TARGETING REAGENTS

Targeting reagents:

CRISPR1-tyr,snrpa1 (1)

PHENOTYPE No data available

DISEASE ASSOCIATED WITH snrpa1 HUMAN ORTHOLOG No data available

DISEASE ASSOCIATED WITH snrpa1 VIA EXPERIMENTAL MODELS No data available

GENE ONTOLOGY

Ontology	GO Term
Biological Process	mRNA splicing, via spliceosome (more)
Cellular Component	U2 snRNP (more)
Molecular Function	U2 snRNA binding (more)

GO Terms (all 3)

PROTEIN FAMILIES, DOMAINS AND SITES
InterPro:IPR001611 (1) InterPro:IPR003603 (1) InterPro:IPR032675 (1)	PROSITE:PS51450 (1)

TRANSCRIPTS
Type	Name	Length (bp)	Analysis
ncRNA	snrpa1-003 (1)	732	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	snrpa1-004 (1)	822	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
aberrant processed transcript	snrpa1-201 (1)	1001	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	snrpa1-202 (1)	1115	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

GENE PRODUCT DESCRIPTION No description available

INTERACTIONS AND PATHWAYS

ANTIBODIESNo data available

PLASMIDSNo data available

CONSTRUCTS WITH SEQUENCES FROM snrpa1 No data available

MARKER RELATIONSHIPS

snrpa1Contained in:	[BAC] CH73-44P7 (1) (order this)
snrpa1Encodes:	[EST] IMAGE:7142962 (1) (order this) [cDNA] MGC:101832 (1) (order this), MGC:192566 (1) (order this)

SEQUENCE INFORMATION

Type	Accession #	Length (bp/aa)	Analysis
RNA	RefSeq:NM_001007383 (1)	1055bp	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:CU856378 (1)	89292bp	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:F1R300 (1)	277aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
Sequence Clusters	UniGene:14067 (1)

Sequence Information (all 19)

OTHER snrpa1 GENE PAGES

Alliance (1)

Gene:492511 (1)

VEGA:OTTDARG00000035378 (1)

Ensembl(GRCz11):ENSDARG00000024651 (2)

ORTHOLOGY for snrpa1 (Chr: 7)

CITATIONS (18)

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