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ZIRC
ZFIN ID: ZDB-GENE-041114-79
Gene Name: PCI domain containing 2
Gene Symbol: pcid2
Sequence Ontology ID : SO:0000704

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Previous Names: fa11f03, ik:tdsubc_1e10 (1), im:6909928 (1), tdsubc_1e10, wu:fa11f03 (1), xx:tdsubc_1e10, zgc:101845

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(Including Attributions)
Location: Chr: 1 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have RNA binding activity and double-stranded DNA binding activity. Predicted to be involved in RNA metabolic process; poly(A)+ mRNA export from nucleus; and posttranscriptional  ...
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:6909928]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
zko6a Small Deletion Unknown Unknown CRISPR
  • China Zebrafish Resource Center (CZRC) (order this)
  • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH pcid2 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH pcid2 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process nuclear retention of pre-mRNA at the site of transcription (more)
    Cellular Component COLOCALIZES_WITH nuclear pore (more)
    Molecular Function double-stranded DNA binding (more)
    GO Terms (all 9)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000717 (1)
  • InterPro:IPR036388 (1)
  • PROSITE:PS50250 (1)
  • Pfam:PF01399 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA pcid2-002 (1) 940
    pcid2-003 (1) 417
    pcid2-004 (1) 660
    pcid2-005 (1) 283
    pcid2-006 (1) 276
    mRNA pcid2-201 (1) 1644
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM pcid2 No data available
    MARKER RELATIONSHIPS
    pcid2Contained in: [Fosmid] ZFOS-1608A7 (1), ZFOS-1962A1 (1)
    pcid2Encodes: [EST] fa11f03, IMAGE:6909928 (1) (order this), tdsubc_1e10
    [cDNA] MGC:101845 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001007381 (1)
    Genomic GenBank:FP017167 (1) 39043bp
    Select Tool
    Polypeptide UniProtKB:F1QPP5 (1) 399aa
    Sequence Clusters UniGene:75241 (1)
    Sequence Information (all 19)
    ORTHOLOGY for pcid2 (Chr: 1)
    CITATIONS (18)