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ZIRC
ZFIN ID: ZDB-GENE-041114-79
Gene Name: PCI domain containing 2
Gene Symbol: pcid2    Nomenclature History

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Previous Names: fa11f03, ik:tdsubc_1e10 (1), im:6909928 (1), tdsubc_1e10, wu:fa11f03 (1), xx:tdsubc_1e10, zgc:101845

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 1 Mapping Details/Browsers
Description: Predicted to have RNA binding activity and double-stranded DNA binding activity. Predicted to be involved in RNA metabolic process; poly(A)+ mRNA export from nucleus; and posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery. Predicted to colocalize with the transcriptionally active chromatin. Orthologous to human PCID2 (PCI domain containing 2).
Genome Resources: Alliance (1),  Gene:492509 (1),  Ensembl(GRCz11):ENSDARG00000013802 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:6909928]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
zko6a Small Deletion Unknown Unknown CRISPR
  • China Zebrafish Resource Center (CZRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-pcid2 1
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH pcid2 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH pcid2 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process nuclear retention of pre-mRNA at the site of transcription (more)
    Cellular Component COLOCALIZES_WITH   transcriptionally active chromatin (more)
    Molecular Function double-stranded DNA binding (more)
    GO Terms (all 8)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000717 (1)
  • InterPro:IPR036388 (1)
  • PROSITE:PS50250 (1)
  • Pfam:PF01399 (1)
  • TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA pcid2-201 (1)    Ensembl 1644
    ncRNA pcid2-002 (1)    Ensembl 940
    pcid2-003 (1)    Ensembl 417
    pcid2-004 (1)    Ensembl 660
    pcid2-005 (1)    Ensembl 283
    pcid2-006 (1)    Ensembl 276
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM pcid2 No data available
    MARKER RELATIONSHIPS
    pcid2 Contained in: [Fosmid] ZFOS-1608A7 (1), ZFOS-1962A1 (1)
    pcid2 Encodes: [EST] fa11f03, IMAGE:6909928 (1) (order this), tdsubc_1e10
    [cDNA] MGC:101845 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001007381 (1)
    Genomic GenBank:FP017167 (1) 39043 bp
    Select Tool
    Polypeptide UniProtKB:F1QPP5 (1) 399 aa
    Sequence Clusters UniGene:75241 (1)
    Sequence Information (all 19)
    ORTHOLOGY for pcid2 ( Chr: 1 )
    CITATIONS (19)