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ZIRC
ZFIN ID: ZDB-GENE-041114-5
Gene Name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1a
Gene Symbol: smarcb1a
Sequence Ontology ID : SO:0000704

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Previous Name: zgc:92517 (1)

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(Including Attributions)
Location: Chr: 8 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have DNA binding activity and transcription coactivator activity. Predicted to be involved in nucleosome disassembly and regulation of transcription by RNA polymerase II. Predicted to  ...
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7152185]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la026498Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH smarcb1a HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    atypical teratoid rhabdoid tumor Rhabdoid tumors, somatic 609322
    {Rhabdoid tumor predisposition syndrome 1} 609322
    Coffin-Siris syndrome 3 Coffin-Siris syndrome 3 614608
    neurilemmomatosis {Schwannomatosis-1, susceptibility to} 162091
    DISEASE ASSOCIATED WITH smarcb1a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process chromatin remodeling (more)
    Cellular Component nuclear chromosome (more)
    Molecular Function DNA binding (more)
    GO Terms (all 15)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR006939 (1)
  • InterPro:IPR017393 (1)
  • Pfam:PF04855 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA smarcb1a-201 (1) 1512
    smarcb1a-202 (1) 756
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM smarcb1a No data available
    MARKER RELATIONSHIPS
    smarcb1aContained in: [BAC] CH211-42D10 (1) (order this), CH211-251J10 (1) (order this)
    smarcb1aEncodes: [EST] IMAGE:7152185 (1) (order this)
    [cDNA] MGC:92517 (1) (order this), MGC:172261 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001007296 (1) 1486bp
    Genomic GenBank:BX640478 (1) 191201bp
    Select Tool
    Polypeptide UniProtKB:Q5U379 (1) 373aa
    Sequence Clusters UniGene:84320 (1)
    Sequence Information (all 20)
    ORTHOLOGY for smarcb1a (Chr: 8)
    CITATIONS (26)