ZFIN ID: ZDB-GENE-041114-42
Gene Name: RP9 pre-mRNA splicing factor
Gene Symbol: rp9
Sequence Ontology ID : SO:0000704

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Previous Names: im:7137386, zgc:103448 (1)

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(Including Attributions)
Location: Chr: 19 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to be involved in RNA splicing; orthologous to human RP9 (RP9, pre-mRNA splicing factor).
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7137386]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la028051Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH rp9 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    retinitis pigmentosa 9 ?Retinitis pigmentosa 9 180104
    DISEASE ASSOCIATED WITH rp9 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process RNA splicing (more)
    Cellular Component cellular_component (more)
    GO Terms (all 2)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR034585 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA rp9-201 (1) 1138
    aberrant processed transcript rp9-203 (1) 692
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM rp9 No data available
    MARKER RELATIONSHIPS
    rp9Contained in: [BAC] CH73-41K6 (1) (order this), DKEY-184P18 (1) (order this)
    rp9Encodes: [EST] IMAGE:7137386 (1) (order this)
    [cDNA] MGC:103448 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001007353 (1) 1076bp
    Genomic GenBank:CU571256 (1) 144622bp
    Select Tool
    Polypeptide UniProtKB:A0A0R4IJK4 (1) 222aa
    Sequence Clusters UniGene:16501 (1)
    Sequence Information (all 16)
    OTHER rp9 GENE PAGES
  • Alliance (1)
  • Gene:492481 (1)
  • VEGA:OTTDARG00000042910 (1)
  • Ensembl(GRCz11):ENSDARG00000098942 (1)
  • ORTHOLOGY for rp9 (Chr: 19)
    CITATIONS (20)