Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-041114-174
Gene Name: ceroid-lipofuscinosis, neuronal 3
Gene Symbol: cln3
Previous Name: zgc:92244 (1)
Location: Chr: 3   Details
Nomenclature History
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:92244]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
  whole organism
Curated Microarray Expression: GEO (1)
MUTANTS AND TARGETED KNOCKDOWNS
Alleles: sa20092
PHENOTYPE
Phenotype of Human Orthologue OMIM Phenotype ID
Ceroid lipofuscinosis, neuronal, 3 204200
GENE ONTOLOGY
Ontology GO Term
Biological Process arginine transport (more)
Cellular Component integral component of membrane (more)
GO Terms (all 9)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR003492 (1)
  • InterPro:IPR016196 (1)
  • InterPro:IPR018460 (1)
  • Pfam:PF02487 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA cln3-001 (1) 1873
    GENE PRODUCT DESCRIPTION
    ANTIBODIES No data available
    CONSTRUCTS WITH SEQUENCES FROM cln3 No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    cln3 Contained in: [BAC] CH211-198P11 (1) (order this)
    cln3 Encodes: [cDNA] MGC:92244 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001007306 (1) 1858 bp
    Genomic GenBank:BX537342 (1) 195436 bp
    Select Tool
    Polypeptide UniProtKB:Q5U392 (1) 446 aa
    Sequence Clusters UniGene:79095 (1)
    Sequence Information (all 8)
    OTHER cln3 GENE PAGES
  • Gene:492340 (1)
  • VEGA:OTTDARG00000021847 (1)
  • Ensembl(Zv9):ENSDARG00000037865 (1)
  • ORTHOLOGY
      Evidence
    Species Symbol Chr (Position) Accession # AA
    Zebrafish cln3 3  
    Human CLN3 16 (16p12.1)
  • OMIM:607042
  • Gene:1201
  • Mouse Cln3 7 ( 69.16 cM)
  • MGI:107537
  • Gene:12752
  • Orthology Details
    CITATIONS (17)