ZFIN ID: ZDB-GENE-041114-174
Gene Name: ceroid-lipofuscinosis, neuronal 3
Gene Symbol: cln3

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Previous Name: zgc:92244 (1)

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(Including Attributions)
Location: Chr: 3 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:92244]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
  whole organism
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa20092 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH cln3 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    neuronal ceroid lipofuscinosis Ceroid lipofuscinosis, neuronal, 3 204200
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process arginine transport (more)
    Cellular Component integral component of membrane (more)
    GO Terms (all 9)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR003492 (1)
  • InterPro:IPR018460 (1)
  • InterPro:IPR020846 (1)
  • Pfam:PF02487 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA cln3-001 (1) 1873
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYSNo data available
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM cln3 No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    cln3Contained in: [BAC] CH211-198P11 (1) (order this)
    cln3Encodes: [cDNA] MGC:92244 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001007306 (1) 1858bp
    Genomic GenBank:BX537342 (1) 195436bp
    Select Tool
    Polypeptide UniProtKB:Q5U392 (1) 446aa
    Sequence Clusters UniGene:79095 (1)
    Sequence Information (all 8)
    OTHER cln3 GENE PAGES
  • Gene:492340 (1)
  • VEGA:OTTDARG00000021847 (1)
  • Ensembl(GRCz10):ENSDARG00000037865 (1)
  • ORTHOLOGY for cln3 (Chr: 3)
    Species Symbol Chromosome Accession # Evidence
    Human CLN3 16
  • Gene:1201
  • OMIM:607042
  • HGNC:2074
  • Amino acid sequence comparison (1)
    Mouse Cln3 7
  • MGI:107537
  • Gene:12752
  • Amino acid sequence comparison (1)
    Download Curated Orthology
    CITATIONS (17)