ZFIN ID: ZDB-GENE-041114-174
Gene Name: ceroid-lipofuscinosis, neuronal 3
Gene Symbol: cln3
Previous Name: zgc:92244 (1)
Location: Chr: 3 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:92244]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
  whole organism
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS 
Allele Type Mutagen Suppliers
sa20092 Point Mutation ENU
PHENOTYPE No data available
DISEASE ASSOCIATED WITH cln3 HUMAN ORTHOLOG 
Disease Ontology Term OMIM Term OMIM Phenotype ID
neuronal ceroid lipofuscinosis Ceroid lipofuscinosis, neuronal, 3 204200
GENE ONTOLOGY 
Ontology GO Term
Biological Process arginine transport (more)
Cellular Component integral component of membrane (more)
GO Terms (all 9)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR003492 (1)
  • InterPro:IPR018460 (1)
  • InterPro:IPR020846 (1)
  • Pfam:PF02487 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA cln3-001 (1) 1873
    GENE PRODUCT DESCRIPTION
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM cln3 No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS 
    cln3Contained in: [BAC] CH211-198P11 (1) (order this)
    cln3Encodes: [cDNA] MGC:92244 (1) (order this)
    SEQUENCE INFORMATION 
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001007306 (1) 1858bp
    Genomic GenBank:BX537342 (1) 195436bp
    Select Tool
    Polypeptide UniProtKB:Q5U392 (1) 446aa
    Sequence Clusters UniGene:79095 (1)
    Sequence Information (all 8)
    OTHER cln3 GENE PAGES 
  • Gene:492340 (1)
  • VEGA:OTTDARG00000021847 (1)
  • Ensembl(GRCz10):ENSDARG00000037865 (1)
  • ORTHOLOGY for cln3 (Chr: 3) 
    Species Symbol Chromosome Accession # Evidence
    Human CLN3 16
  • Gene:1201
  • OMIM:607042
  • HGNC:2074
  • Amino acid sequence comparison (1)
    Mouse Cln3 7
  • MGI:107537
  • Gene:12752
  • Amino acid sequence comparison (1)
    Download Curated Orthology
    CITATIONS (17)