ZFIN ID: ZDB-GENE-041114-174
Gene Name: ceroid-lipofuscinosis, neuronal 3
Gene Symbol: cln3
Previous Name: zgc:92244 (1)
Location: Chr: 3 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:92244]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
  whole organism
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS 
Allele Type Mutagen Suppliers
sa20092 Point Mutation ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH cln3 HUMAN ORTHOLOG 
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    neuronal ceroid lipofuscinosis Ceroid lipofuscinosis, neuronal, 3 204200
    GENE ONTOLOGY 
    Ontology GO Term
    Biological Process arginine transport (more)
    Cellular Component integral component of membrane (more)
    GO Terms (all 9)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR003492 (1)
  • InterPro:IPR018460 (1)
  • InterPro:IPR020846 (1)
  • Pfam:PF02487 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA cln3-001 (1) 1873
    GENE PRODUCT DESCRIPTION
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM cln3 No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS 
    cln3Contained in: [BAC] CH211-198P11 (1) (order this)
    cln3Encodes: [cDNA] MGC:92244 (1) (order this)
    SEQUENCE INFORMATION 
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001007306 (1) 1858bp
    Genomic GenBank:BX537342 (1) 195436bp
    Select Tool
    Polypeptide UniProtKB:Q5U392 (1) 446aa
    Sequence Clusters UniGene:79095 (1)
    Sequence Information (all 8)
    OTHER cln3 GENE PAGES 
  • Gene:492340 (1)
  • VEGA:OTTDARG00000021847 (1)
  • Ensembl(GRCz10):ENSDARG00000037865 (1)
  • ORTHOLOGY for cln3 (Chr: 3) 
    Species Symbol Chromosome Accession # Evidence
    Human CLN3 16
  • Gene:1201
  • OMIM:607042
  • HGNC:2074
  • Amino acid sequence comparison (1)
    Mouse Cln3 7
  • MGI:107537
  • Gene:12752
  • Amino acid sequence comparison (1)
    Download Curated Orthology
    CITATIONS (17)