ZFIN ID: ZDB-GENE-041114-14
Gene Name: RAD52 motif containing 1
Gene Symbol: rdm1    Nomenclature History

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Name: zgc:103564

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 3 Mapping Details/Browsers
Description: Predicted to have DNA binding activity and RNA binding activity. Predicted to localize to the nucleolus. Orthologous to human RDM1 (RAD52 motif containing 1).
Genome Resources: Alliance (1),  Gene:492461 (1),  Ensembl(GRCz11):ENSDARG00000038186 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:103564]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa13075 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH rdm1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH rdm1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component cytoplasm (more)
    Molecular Function DNA binding (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Domain IPR000504 RNA recognition motif domain
    Domain IPR034200 RDM1, RNA recognition motif
    Family IPR040224 RAD52 motif-containing protein 1
    Homologous_superfamily IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
    Homologous_superfamily IPR035979 RNA-binding domain superfamily
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA zgc:103564-201 (1)    Ensembl 1400
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM rdm1 No data available
    MARKER RELATIONSHIPS
    rdm1 Contained in: [BAC] DKEY-248K5 (1) (order this)
    rdm1 Encodes: [cDNA] MGC:103564 (1), MGC:191809 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001007333 (1) 1401 nt
    Genomic GenBank:BX005440 (1) 166695 nt
    Select Tool
    Polypeptide UniProtKB:B2GQ78 (1) 280 aa
    Sequence Information (all 15)
    ORTHOLOGY for rdm1 ( Chr: 3 )
    CITATIONS (19)