ZFIN ID: ZDB-GENE-041114-12
Gene Name: tRNA methyltransferase 10C, mitochondrial RNase P subunit
Gene Symbol: trmt10c
Sequence Ontology ID : SO:0000704

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Previous Names: rg9mtd1, wu:fb53e06, zgc:103570 (1)

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(Including Attributions)
Location: Chr: 1 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have several functions, including RNA metabolic process, RNA metabolic process, and tRNA binding activity; predicted to be involved in mitochondrial tRNA 3'-end processing and positive  ...
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:103570]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa1936 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa5931 Point Mutation Unknown Premature Stop ENU
    zko22a Small Deletion Unknown Unknown CRISPR
  • China Zebrafish Resource Center (CZRC, ZKO consortium) (order this)
  • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH trmt10c HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    Combined oxidative phosphorylation deficiency 30 616974
    DISEASE ASSOCIATED WITH trmt10c VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process tRNA processing (more)
    Cellular Component mitochondrion (more)
    GO Terms (all 2)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR007356 (1)
  • InterPro:IPR016009 (1)
  • InterPro:IPR025812 (1)
  • InterPro:IPR028564 (1)
  • InterPro:IPR038459 (1)
  • PROSITE:PS51675 (1)
  • Pfam:PF01746 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA trmt10c-003 (1) 538
    mRNA trmt10c-202 (1) 1683
    trmt10c-203 (1) 1139
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM trmt10c No data available
    MARKER RELATIONSHIPS
    trmt10cContained in: [BAC] CH73-41E3 (1) (order this)
    trmt10cEncodes: [EST] fb53e06
    [cDNA] MGC:103570 (1) (order this)
    trmt10cHas Artifact: [EST] fb23g02 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001007332 (1) 1154bp
    Genomic GenBank:CU571081 (1) 130071bp
    Select Tool
    Polypeptide UniProtKB:B8JM40 (1) 403aa
    Sequence Clusters UniGene:75169 (1)
    Sequence Information (all 13)
    OTHER trmt10c GENE PAGES
  • Alliance (1)
  • Gene:492460 (1)
  • VEGA:OTTDARG00000029777 (1)
  • Ensembl(GRCz11):ENSDARG00000041575 (2)
  • ORTHOLOGY for trmt10c (Chr: 1)
    CITATIONS (20)