Gene
kif20ba
- ID
- ZDB-GENE-041111-213
- Name
- kinesin family member 20Ba
- Symbol
- kif20ba Nomenclature History
- Previous Names
-
- im:7142427
- im:7142489
- im:7144435
- Type
- protein_coding_gene
- Location
- Chr: 17 Mapping Details/Browsers
- Description
- Predicted to enable ATP hydrolysis activity; microtubule binding activity; and microtubule motor activity. Predicted to be involved in microtubule-based movement. Predicted to be located in cytoskeleton. Predicted to be part of kinesin complex. Predicted to be active in cytoplasm; microtubule; and nucleus. Orthologous to human KIF20B (kinesin family member 20B).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 2 figures from Thisse et al., 2004
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
| Allele | Type | Localization | Consequence | Mutagen | Supplier |
|---|---|---|---|---|---|
| sa972 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa5901 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa28850 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa32150 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa36402 | Allele with one point mutation | Unknown | Splice Site | ENU |
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No data available
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Conserved_site | IPR019821 | Kinesin motor domain, conserved site |
| Domain | IPR001752 | Kinesin motor domain |
| Family | IPR047149 | Kinesin-like protein KIF11-like |
| Homologous_superfamily | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Homologous_superfamily | IPR036961 | Kinesin motor domain superfamily |
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Domain Details Per Protein
| Protein | Additional Resources | Length | Kinesin-like protein KIF11-like | Kinesin motor domain | Kinesin motor domain, conserved site | Kinesin motor domain superfamily | P-loop containing nucleoside triphosphate hydrolase |
|---|---|---|---|---|---|---|---|
| UniProtKB:E7FAN6 | InterPro | 1683 | |||||
| UniProtKB:A0A8M1RFH9 | InterPro | 1703 |
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| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
kif20ba-201
(1)
|
Ensembl | 7,334 nt | ||
| mRNA |
kif20ba-202
(1)
|
Ensembl | 6,542 nt | ||
| mRNA |
kif20ba-203
(1)
|
Ensembl | 661 nt | ||
| ncRNA |
kif20ba-002
(1)
|
Ensembl | 872 nt | ||
| ncRNA |
kif20ba-003
(1)
|
Ensembl | 549 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | DKEY-28J9 | ZFIN Curated Data | |
| Encodes | EST | IMAGE:7142427 | Thisse et al., 2004 | |
| Encodes | EST | IMAGE:7142489 | Thisse et al., 2004 | |
| Encodes | EST | IMAGE:7144435 | Thisse et al., 2004 |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:XM_003200345 (1) | 5694 nt | ||
| Genomic | GenBank:BX649437 (1) | 158346 nt | ||
| Polypeptide | UniProtKB:A0A8M1RFH9 (1) | 1703 aa |
- Comparative Orthology
- Alliance
- Sun, K., Han, Y., Li, J., Yu, S., Huang, Y., Zhang, Y., Reilly, J., Tu, J., Gao, P., Jia, D., Chen, X., Hu, H., Ren, M., Li, P., Luo, J., Ren, X., Zhang, X., Shu, X., Liu, F., Liu, M., Tang, Z. (2023) The splicing factor DHX38 enables retinal development through safeguarding genome integrity. iScience. 26:108103108103
- Tu, J., Yu, S., Li, J., Ren, M., Zhang, Y., Luo, J., Sun, K., Lv, Y., Han, Y., Huang, Y., Ren, X., Jiang, T., Tang, Z., Williams, M.T.S., Lu, Q., Liu, M. (2022) Dhx38 regulates the maintenance and differentiation of erythro-myeloid progenitors and hematopoietic stem cells by alternative splicing. Development (Cambridge, England). 149(17)
- Boskovic, S., Marín-Juez, R., Jasnic, J., Reischauer, S., El Sammak, H., Kojic, A., Faulkner, G., Radojkovic, D., Stainier, D.Y.R., Kojic, S. (2018) Characterization of zebrafish (Danio rerio) muscle ankyrin repeat proteins reveals their conserved response to endurance exercise. PLoS One. 13:e0204312
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
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