ZFIN ID: ZDB-GENE-041111-110
Gene Name: UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2
Gene Symbol: galnt2    Nomenclature History

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Previous Names: im:7140357 (1), si:dkey-162b3.1 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 13 Mapping Details/Browsers
Description: Predicted to have carbohydrate binding activity and transferase activity, transferring glycosyl groups. Involved in fin regeneration and regulation of bone mineralization. Predicted to localize to the Golgi apparatus. Orthologous to human GALNT2 (polypeptide N-acetylgalactosaminyltransferase 2).
Genome Resources: Alliance (1),  Gene:570248 (1),  Ensembl(GRCz11):ENSDARG00000003829 (2)
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7140357]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa12860 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa14540 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa17374 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa24933 Point Mutation Unknown Premature Stop ENU
    sa28108 Point Mutation Unknown Missense, Splice Site ENU
    zju110Tg Transgenic Insertion Unknown Unknown DNA
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH galnt2 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH galnt2 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process fin regeneration (more)
    Cellular Component Golgi apparatus (more)
    Molecular Function carbohydrate binding (more)
    GO Terms (all 10)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Domain IPR000772 Ricin B, lectin domain
    Domain IPR001173 Glycosyltransferase 2-like
    Homologous_superfamily IPR029044 Nucleotide-diphospho-sugar transferases
    Homologous_superfamily IPR035992 Ricin B-like lectins
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA galnt2-201 (1)    Ensembl 4104
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM galnt2 No data available
    MARKER RELATIONSHIPS
    galnt2 Contained in: [BAC] DKEY-162B3 (1) (order this)
    galnt2 Encodes: [EST] IMAGE:7140357 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001128351 (1) 4104 bp
    Genomic GenBank:CR762497 (1) 258636 bp Blast at MegaBLAST
    Polypeptide UniProtKB:B0V0U4 (1) 559 aa
    Sequence Information (all 8)
    ORTHOLOGY for galnt2 ( Chr: 13 )
    CITATIONS (25)