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ZIRC
ZFIN ID: ZDB-GENE-041025-1
Gene Name: LIM homeobox 6
Gene Symbol: lhx6    Nomenclature History

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 10 Mapping Details/Browsers
Description: Predicted to have DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II regulatory region sequence-specific DNA binding activity. Predicted to be involved in forebrain neuron development and positive regulation of transcription by RNA polymerase II. Predicted to localize to the nucleus. Is expressed in forebrain; head mesenchyme; pharyngeal arch; and pharynx. Orthologous to human LHX6 (LIM homeobox 6).
Genome Resources: Alliance (1),  Gene:445565 (1),  Ensembl(GRCz11):ENSDARG00000006896 (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa34853 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH lhx6 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH lhx6 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process regulation of transcription, DNA-templated (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 10)
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA lhx6-201 (1)    Ensembl 3278
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM lhx6 No data available
    MARKER RELATIONSHIPS
    lhx6 Contained in: [BAC] DKEY-47M8 (1) (order this)
    lhx6 Encodes: [cDNA] MGC:193771 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001004015 (1) 3279 bp
    Genomic GenBank:BX571668 (1) 242710 bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q6BDC4 (1) 375 aa
    Sequence Clusters UniGene:33994 (1)
    Sequence Information (all 14)
    ORTHOLOGY for lhx6 ( Chr: 10 )
    CITATIONS (27)